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    CHRD chordin [ Gallus gallus (chicken) ]

    Gene ID: 395828, updated on 14-Feb-2019

    Summary

    Symbol
    CHRDprovided by CGNC
    Full Name
    chordinprovided by CGNC
    Primary source
    CGNC:20229
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs

    Genomic context

    See CHRD in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 9 NC_006096.5 (16088743..16097338, complement)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 9 NC_006096.4 (15981152..15989729, complement)
    102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) 9 NC_006096.3 (15406844..15413438, complement)

    Chromosome 9 - NC_006096.5Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 131 member A Neighboring gene heat shock protein beta-7-like Neighboring gene chloride voltage-gated channel 2 Neighboring gene thrombopoietin Neighboring gene RNA polymerase II subunit H

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • TGF-beta signaling pathway, organism-specific biosystem (from KEGG)
      TGF-beta signaling pathway, organism-specific biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
    • TGF-beta signaling pathway, conserved biosystem (from KEGG)
      TGF-beta signaling pathway, conserved biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204980.2NP_990311.2  chordin precursor

      Status: VALIDATED

      Source sequence(s)
      AADN05000526
      Conserved Domains (4) summary
      smart00214
      Location:773839
      VWC; von Willebrand factor (vWF) type C domain
      smart00754
      Location:535656
      CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
      pfam00093
      Location:694751
      VWC; von Willebrand factor type C domain
      cl17735
      Location:46114
      VWC; von Willebrand factor type C domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006096.5 Reference GRCg6a Primary Assembly

      Range
      16088743..16097338 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015291373.2XP_015146859.1  chordin isoform X2

      Conserved Domains (4) summary
      smart00214
      Location:10371103
      VWC; von Willebrand factor (vWF) type C domain
      smart00754
      Location:799920
      CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
      pfam00093
      Location:9581015
      VWC; von Willebrand factor type C domain
      cl17735
      Location:292359
      VWC; von Willebrand factor type C domain
    2. XM_015291374.2XP_015146860.1  chordin isoform X3

      Conserved Domains (4) summary
      smart00214
      Location:10191085
      VWC; von Willebrand factor (vWF) type C domain
      smart00754
      Location:781902
      CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
      pfam00093
      Location:940997
      VWC; von Willebrand factor type C domain
      cl17735
      Location:292360
      VWC; von Willebrand factor type C domain
    3. XM_015291372.2XP_015146858.1  chordin isoform X1

      Conserved Domains (4) summary
      smart00214
      Location:10381104
      VWC; von Willebrand factor (vWF) type C domain
      smart00754
      Location:800921
      CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
      pfam00093
      Location:9591016
      VWC; von Willebrand factor type C domain
      cl17735
      Location:292360
      VWC; von Willebrand factor type C domain
    4. XM_025153315.1XP_025009083.1  chordin isoform X4

      Conserved Domains (4) summary
      smart00214
      Location:899965
      VWC; von Willebrand factor (vWF) type C domain
      smart00754
      Location:661782
      CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
      pfam00093
      Location:820877
      VWC; von Willebrand factor type C domain
      cl17735
      Location:153221
      VWC; von Willebrand factor type C domain
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