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    SLIT1 slit guidance ligand 1 [ Gallus gallus (chicken) ]

    Gene ID: 395293, updated on 30-Jun-2018

    Summary

    Symbol
    SLIT1provided by CGNC
    Full Name
    slit guidance ligand 1provided by CGNC
    Primary source
    CGNC:49247
    See related
    Ensembl:ENSGALG00000042871
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs

    Genomic context

    See SLIT1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 6 NC_006093.5 (23344960..23376231)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 6 NC_006093.4 (22380435..22411706)

    Chromosome 6 - NC_006093.5Genomic Context describing neighboring genes Neighboring gene ribosomal RNA processing 12 homolog Neighboring gene microRNA 6604 Neighboring gene Rho GTPase activating protein 19 Neighboring gene ligand dependent nuclear receptor corepressor Neighboring gene peroxisome proliferator-activated receptor gamma, coactivator-related 1

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001277336.1NP_001264265.1  slit homolog 1 protein precursor

      Status: VALIDATED

      Source sequence(s)
      AADN05000306, GU263465
      UniProtKB/TrEMBL
      D2XV92
      Related
      ENSGALP00000052901.1, ENSGALT00000066156.1
      Conserved Domains (10) summary
      smart00013
      Location:740772
      LRRNT; Leucine rich repeat N-terminal domain
      smart00082
      Location:873922
      LRRCT; Leucine rich repeat C-terminal domain
      smart00282
      Location:11961329
      LamG; Laminin G domain
      cd00054
      Location:10901126
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00116
      Location:94243
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:7093
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00008
      Location:10161046
      EGF; EGF-like domain
      pfam12799
      Location:340380
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:166224
      LRR_8; Leucine rich repeat
      cl15307
      Location:446476
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006093.5 Reference GRCg6a Primary Assembly

      Range
      23344960..23376231
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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