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    foxa1 forkhead box A1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 395059, updated on 20-Jun-2018

    Summary

    Official Symbol
    foxa1provided by Xenbase
    Official Full Name
    forkhead box A1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-487352
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    fkh2; Hnf3a; tcf3a; xfkh2; foxa1b; tFoxA1; foxa1-a; foxa1-b; HNF3alpha; HNF3-alpha
    Orthologs

    Genomic context

    See foxa1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (88792393..88796588, complement)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668241.1 (86357207..86361402)

    Chromosome 8 - NC_030684.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 (mitochondrial oxoadipate carrier), member 21 Neighboring gene mirror-image polydactyly 1 Neighboring gene tetratricopeptide repeat domain 6 Neighboring gene somatostatin receptor 1

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Clone Names

    • MGC52590, MGC75967

    General protein information

    Preferred Names
    forkhead box protein A1
    Names
    HNF-3 alpha
    HNF3 alpha
    forkhead transcription factor FoxA1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204088.1NP_989419.1  forkhead box protein A1

      See identical proteins and their annotated locations for NP_989419.1

      Status: PROVISIONAL

      Source sequence(s)
      AY157637
      UniProtKB/Swiss-Prot
      Q8AWH1
      Conserved Domains (3) summary
      smart00339
      Location:158246
      FH; FORKHEAD
      pfam08430
      Location:17157
      Forkhead_N; Forkhead N-terminal region
      pfam09354
      Location:354417
      HNF_C; HNF3 C-terminal domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030684.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      88792393..88796588 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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