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    map1lc3b microtubule associated protein 1 light chain 3 beta [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 394972, updated on 20-Jun-2018

    Summary

    Symbol
    map1lc3bprovided by Xenbase
    Full Name
    microtubule associated protein 1 light chain 3 betaprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-953620
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs

    Genomic context

    See map1lc3b in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (67846598..67864902)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668236.1 (46827766..46846070, complement)

    Chromosome 4 - NC_030680.1Genomic Context describing neighboring genes Neighboring gene F-box protein 31 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene zinc finger CCHC-type containing 14 Neighboring gene junctophilin 3

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    Clone Names

    • MGC76283

    General protein information

    Preferred Names
    microtubule-associated proteins 1A/1B light chain 3B

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204015.2NP_989346.1  microtubule-associated proteins 1A/1B light chain 3B

      See identical proteins and their annotated locations for NP_989346.1

      Status: VALIDATED

      Source sequence(s)
      AAMC03015630, AAMC03015631
      UniProtKB/TrEMBL
      Q6P2W9
      Conserved Domains (1) summary
      cd01611
      Location:7120
      GABARAP; Ubiquitin domain of GABA-receptor-associated protein

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030680.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      67846598..67864902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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