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    fbxo9 F-box protein 9 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 394601, updated on 20-Jun-2018

    Summary

    Symbol
    fbxo9provided by Xenbase
    Full Name
    F-box protein 9provided by Xenbase
    Primary source
    Xenbase:XB-GENE-1002447
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs

    Genomic context

    See fbxo9 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (114137805..114161545)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668237.1 (32479639..32503311)

    Chromosome 5 - NC_030681.1Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase 3-like Neighboring gene glutathione S-transferase alpha 4 Neighboring gene intestinal cell (MAK-like) kinase Neighboring gene glial cells missing homolog 1 Neighboring gene uncharacterized LOC105947389

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    Clone Names

    • MGC75727

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_203674.1NP_989005.1  F-box only protein 9

      See identical proteins and their annotated locations for NP_989005.1

      Status: PROVISIONAL

      Source sequence(s)
      BC061281
      UniProtKB/TrEMBL
      Q6P8E7
      Conserved Domains (2) summary
      pfam12937
      Location:171211
      F-box-like; F-box-like
      cl00299
      Location:80110
      MIT; MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030681.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      114137805..114161545
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012962833.2XP_012818287.1  F-box only protein 9 isoform X1

      See identical proteins and their annotated locations for XP_012818287.1

      UniProtKB/Swiss-Prot
      F6Y9J3
      Conserved Domains (2) summary
      pfam12937
      Location:171222
      F-box-like; F-box-like
      cl00299
      Location:80110
      MIT; MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
    2. XM_012962835.2XP_012818289.1  F-box only protein 9 isoform X2

      Conserved Domains (2) summary
      pfam12937
      Location:158209
      F-box-like; F-box-like
      cl00299
      Location:6797
      MIT; MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
    3. XM_018093819.1XP_017949308.1  F-box only protein 9 isoform X2

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