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    stn1 STN1, CST complex subunit [ Danio rerio (zebrafish) ]

    Gene ID: 393360, updated on 12-Aug-2018

    Summary

    Official Symbol
    stn1provided by ZNC
    Official Full Name
    STN1, CST complex subunitprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1390
    See related
    Ensembl:ENSDARG00000007734 Vega:OTTDARG00000030041
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    obfc1; zgc:64174
    Orthologs

    Genomic context

    See stn1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (47499913..47513484)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (46808681..46822252)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 58a Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene SH3 and PX domains 2Aa Neighboring gene neuralized E3 ubiquitin protein ligase 1Aa

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Clone Names

    • MGC64174

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    single-stranded telomeric DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    single-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    single-stranded telomeric DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    telomeric DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    negative regulation of telomere maintenance via telomerase IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    telomere capping IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    telomere capping IEA
    Inferred from Electronic Annotation
    more info
     
    telomere maintenance via telomere lengthening IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    telomere maintenance via telomere lengthening ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    vasculature development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    CST complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    CST complex IEA
    Inferred from Electronic Annotation
    more info
     
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    chromosome, telomeric region IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear chromosome, telomeric region IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear chromosome, telomeric region ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    CST complex subunit STN1
    Names
    oligonucleotide/oligosaccharide-binding fold containing 1
    oligonucleotide/oligosaccharide-binding fold-containing protein 1
    suppressor of cdc thirteen homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200389.1NP_956683.1  CST complex subunit STN1

      See identical proteins and their annotated locations for NP_956683.1

      Status: PROVISIONAL

      Source sequence(s)
      BC053298
      UniProtKB/Swiss-Prot
      B8JKF4
      Related
      ENSDARP00000013967.6, OTTDARP00000033079, ENSDART00000027624.7, OTTDART00000041411
      Conserved Domains (2) summary
      cd04483
      Location:59162
      hOBFC1_like; hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which ...
      pfam09170
      Location:164334
      STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      47499913..47513484
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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