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    wdr45b WD repeat domain 45B [ Danio rerio (zebrafish) ]

    Gene ID: 393210, updated on 14-Feb-2019

    Summary

    Official Symbol
    wdr45bprovided by ZNC
    Official Full Name
    WD repeat domain 45Bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-863
    See related
    Ensembl:ENSDARG00000021557
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    WIPI-3; wdr45l; zgc:56002
    Orthologs

    Genomic context

    See wdr45b in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (40351..46985, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (269291..273684, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 12 NC_007123.5 (284705..291375, complement)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene shisa family member 6 Neighboring gene forkhead box K2 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene mitochondrial ribosomal protein L58

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Clone Names

    • MGC56002

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    phosphatidylinositol-3,5-bisphosphate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    phosphatidylinositol-3,5-bisphosphate binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    phosphatidylinositol-3-phosphate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    phosphatidylinositol-3-phosphate binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    autophagosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    autophagosome assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    autophagy IEA
    Inferred from Electronic Annotation
    more info
     
    autophagy of mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cellular response to starvation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein lipidation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein localization to phagophore assembly site IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    extrinsic component of membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    lysosome IEA
    Inferred from Electronic Annotation
    more info
     
    lysosome ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    phagophore assembly site ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    phagophore assembly site membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    WD repeat domain phosphoinositide-interacting protein 3
    Names
    WD repeat-containing protein 45-like
    WD repeat-containing protein 45B
    WDR45-like protein
    wdr45 like

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200240.2NP_956534.2  WD repeat domain phosphoinositide-interacting protein 3

      Status: VALIDATED

      Source sequence(s)
      CU611036
      UniProtKB/TrEMBL
      A8KC31
      Related
      ENSDARP00000126974.1, ENSDART00000152327.3
      Conserved Domains (3) summary
      COG2319
      Location:80295
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:145183
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:34257
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      40351..46985 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_002459723.1 RNA Sequence

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