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    Poc1b POC1 centriolar protein B [ Mus musculus (house mouse) ]

    Gene ID: 382406, updated on 5-Aug-2018

    Summary

    Official Symbol
    Poc1bprovided by MGI
    Official Full Name
    POC1 centriolar protein Bprovided by MGI
    Primary source
    MGI:MGI:1918511
    See related
    Ensembl:ENSMUSG00000019952 Vega:OTTMUSG00000032479
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Wdr51b; 4933430F16Rik
    Expression
    Broad expression in testis adult (RPKM 19.9), CNS E11.5 (RPKM 7.7) and 25 other tissues See more
    Orthologs

    Genomic context

    See Poc1b in Genome Data Viewer
    Location:
    10; 10 C3-D1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (99107036..99198074)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (98569805..98660622)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 34346 Neighboring gene ATPase, Ca++ transporting, plasma membrane 1 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 4 Neighboring gene predicted gene, 34574 Neighboring gene predicted gene, 34777

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    cell projection organization IEA
    Inferred from Electronic Annotation
    more info
     
    cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    retina homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    centriole ISO
    Inferred from Sequence Orthology
    more info
     
    centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    ciliary basal body ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    spindle pole ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    POC1 centriolar protein homolog B
    Names
    WD repeat domain 51B
    WD repeat-containing protein 51B

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027740.7NP_082016.1  POC1 centriolar protein homolog B

      See identical proteins and their annotated locations for NP_082016.1

      Status: VALIDATED

      Source sequence(s)
      AK050233, BC050888, BC144819, CO041491
      Consensus CDS
      CCDS36045.1
      UniProtKB/Swiss-Prot
      Q8BHD1
      Related
      ENSMUSP00000020113.8, OTTMUSP00000043065, ENSMUST00000020113.14
      Conserved Domains (3) summary
      COG2319
      Location:14300
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:10298
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:63100
      7WD40; WD40 repeat [structural motif]

    RNA

    1. NR_153333.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC050888, BC144819, CO041491

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      99107036..99198074
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011243502.1XP_011241804.1  POC1 centriolar protein homolog B isoform X1

      Conserved Domains (3) summary
      COG2319
      Location:284
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:1551
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:484
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RNA

    1. XR_001779545.1 RNA Sequence

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