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    ldb3.S LIM domain binding 3 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 379929, updated on 8-Apr-2017

    Summary

    Official Symbol
    ldb3.S
    Official Full Name
    LIM domain binding 3 S homeolog
    Primary source
    Xenbase:XB-GENE-6254477
    Locus tag
    XELAEV_18000669mg
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    ldb3

    Genomic context

    See ldb3.S in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694810.1 (8580351..8690525, complement)

    NW_016694810.1Genomic Context describing neighboring genes Neighboring gene multimerin 2 S homeolog Neighboring gene protein FAM47E-like Neighboring gene bone morphogenetic protein receptor type 1A S homeolog Neighboring gene opsin 4 S homeolog Neighboring gene WAPL cohesin release factor S homeolog

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NW_016694810.1 Unplaced Scaffold Reference Xenopus_laevis_v2 Primary Assembly

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    LIM domain binding 3 S homeolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001086768.1NP_001080237.1  LIM domain binding 3 S homeolog

      See identical proteins and their annotated locations for NP_001080237.1

      Status: PROVISIONAL

      Source sequence(s)
      BC042340
      UniProtKB/TrEMBL
      Q7ZYP4
      Conserved Domains (2) summary
      cd00992
      Location:981
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:148242
      DUF4749; Domain of unknown function (DUF4749)

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v2 Primary Assembly

    Genomic

    1. NW_016694810.1 Reference Xenopus_laevis_v2 Primary Assembly

      Range
      8580351..8690525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018239420.1XP_018094909.1  LIM domain binding 3 S homeolog isoform X4

    2. XM_018239421.1XP_018094910.1  LIM domain binding 3 S homeolog isoform X5

    3. XM_018239419.1XP_018094908.1  LIM domain binding 3 S homeolog isoform X3

    4. XM_018239418.1XP_018094907.1  LIM domain binding 3 S homeolog isoform X2

    5. XM_018239415.1XP_018094904.1  LIM domain binding 3 S homeolog isoform X1

    6. XM_018239417.1XP_018094906.1  LIM domain binding 3 S homeolog isoform X1

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