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    matn1.L matrilin 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 379491, updated on 2-Mar-2018

    Summary

    Symbol
    matn1.L
    Full Name
    matrilin 1 L homeolog
    Primary source
    Xenbase:XB-GENE-957564
    Locus tag
    XELAEV_18012480mg
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    cmp; crtm; matn1; xmatn1

    Genomic context

    See matn1.L in Genome Data Viewer
    Location:
    chromosome: 2L
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (80702658..80710241)

    Chromosome 2L - NC_030726.1Genomic Context describing neighboring genes Neighboring gene syndecan 3 L homeolog Neighboring gene lysosomal protein transmembrane 5 L homeolog Neighboring gene receptor-type tyrosine-protein phosphatase U-like Neighboring gene acrosin-like L homeolog

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_030726.1 Chromosome 2L Reference Xenopus_laevis_v2 Primary Assembly

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    matrilin 1 L homeolog; matrilin 1, cartilage matrix protein L homeolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001086332.1NP_001079801.1  matrilin 1 L homeolog precursor

      See identical proteins and their annotated locations for NP_001079801.1

      Status: PROVISIONAL

      Source sequence(s)
      BC054272
      UniProtKB/TrEMBL
      Q7SYT5
      Conserved Domains (2) summary
      cd01475
      Location:35258
      vWA_Matrilin; VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. ...
      cl00057
      Location:265489
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v2 Primary Assembly

    Genomic

    1. NC_030726.1 Reference Xenopus_laevis_v2 Primary Assembly

      Range
      80702658..80710241
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018244778.1XP_018100267.1  matrilin 1, cartilage matrix protein L homeolog isoform X1

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