Format

Send to:

Choose Destination
    • Showing Current items.

    QKI QKI, KH domain containing RNA binding [ Gallus gallus (chicken) ]

    Gene ID: 374204, updated on 7-Jul-2018

    Summary

    Symbol
    QKIprovided by CGNC
    Full Name
    QKI, KH domain containing RNA bindingprovided by CGNC
    Primary source
    CGNC:8781
    See related
    Ensembl:ENSGALG00000011555
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs

    Genomic context

    See QKI in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 3 NC_006090.5 (44204197..44347294, complement)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 3 NC_006090.4 (44231755..44374728, complement)

    Chromosome 3 - NC_006090.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112532147 Neighboring gene uncharacterized LOC107053031 Neighboring gene uncharacterized LOC112532091 Neighboring gene parkin coregulated Neighboring gene parkin RBR E3 ubiquitin protein ligase

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    SH3 domain binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA transport IEA
    Inferred from Electronic Annotation
    more info
     
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein quaking
    Names
    RNA binding/signal transduction protein QkI-2
    homolog of mouse quaking QKI (KH domain RNA binding protein)
    quaking homolog, KH domain RNA binding

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204310.2NP_989641.2  protein quaking

      See identical proteins and their annotated locations for NP_989641.2

      Status: PROVISIONAL

      Source sequence(s)
      U86764
      UniProtKB/Swiss-Prot
      Q9YH18
      Related
      ENSGALP00000046806.1, ENSGALT00000082921.1
      Conserved Domains (4) summary
      cd02395
      Location:83205
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam07777
      Location:232277
      MFMR; G-box binding protein MFMR
      pfam16544
      Location:1068
      STAR_dimer; Homodimerization region of STAR domain protein
      pfam16551
      Location:313340
      Quaking_NLS; Putative nuclear localization signal of quaking

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006090.5 Reference GRCg6a Primary Assembly

      Range
      44204197..44347294 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015283999.2XP_015139485.1  protein quaking isoform X2

      Conserved Domains (4) summary
      cd02395
      Location:83222
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam07777
      Location:227293
      MFMR; G-box binding protein MFMR
      pfam16544
      Location:1068
      STAR_dimer; Homodimerization region of STAR domain protein
      pfam16551
      Location:329356
      Quaking_NLS; Putative nuclear localization signal of quaking
    2. XM_025148481.1XP_025004249.1  protein quaking isoform X7

      Conserved Domains (3) summary
      cd02395
      Location:83222
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam16544
      Location:1068
      STAR_dimer; Homodimerisation region of STAR domain protein
      cl26247
      Location:212331
      DNA_pol3_delta2; DNA polymerase III, delta subunit
    3. XM_015283998.2XP_015139484.1  protein quaking isoform X1

      Conserved Domains (4) summary
      cd02395
      Location:83222
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam07777
      Location:249294
      MFMR; G-box binding protein MFMR
      pfam16544
      Location:1068
      STAR_dimer; Homodimerization region of STAR domain protein
      pfam16551
      Location:330357
      Quaking_NLS; Putative nuclear localization signal of quaking
    4. XM_015284003.2XP_015139489.1  protein quaking isoform X6

      UniProtKB/Swiss-Prot
      Q9YH18
      Conserved Domains (4) summary
      cd02395
      Location:83205
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam07777
      Location:224269
      MFMR; G-box binding protein MFMR
      pfam16544
      Location:1068
      STAR_dimer; Homodimerization region of STAR domain protein
      pfam16551
      Location:305332
      Quaking_NLS; Putative nuclear localization signal of quaking
    5. XM_015284000.2XP_015139486.1  protein quaking isoform X3

      UniProtKB/TrEMBL
      F1NWV0
      Related
      ENSGALP00000018821.4
      Conserved Domains (4) summary
      cd02395
      Location:83220
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam07777
      Location:247292
      MFMR; G-box binding protein MFMR
      pfam16544
      Location:1068
      STAR_dimer; Homodimerization region of STAR domain protein
      pfam16551
      Location:328355
      Quaking_NLS; Putative nuclear localization signal of quaking
    6. XM_015284001.2XP_015139487.1  protein quaking isoform X4

      UniProtKB/Swiss-Prot
      Q9YH18
      Conserved Domains (4) summary
      cd02395
      Location:83222
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam07777
      Location:241286
      MFMR; G-box binding protein MFMR
      pfam16544
      Location:1068
      STAR_dimer; Homodimerization region of STAR domain protein
      pfam16551
      Location:322349
      Quaking_NLS; Putative nuclear localization signal of quaking
    7. XM_015284004.2XP_015139490.1  protein quaking isoform X8

      Conserved Domains (3) summary
      cd02395
      Location:83222
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam07777
      Location:241286
      MFMR; G-box binding protein MFMR
      pfam16544
      Location:1068
      STAR_dimer; Homodimerization region of STAR domain protein
    8. XM_015284002.2XP_015139488.1  protein quaking isoform X5

      Conserved Domains (3) summary
      cd02395
      Location:83222
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam07777
      Location:249294
      MFMR; G-box binding protein MFMR
      pfam16544
      Location:1068
      STAR_dimer; Homodimerization region of STAR domain protein

    RNA

    1. XR_003074204.1 RNA Sequence

    2. XR_003074203.1 RNA Sequence

    3. XR_003074205.1 RNA Sequence

    Support Center