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    IMPG1 interphotoreceptor matrix proteoglycan 1 [ Gallus gallus (chicken) ]

    Gene ID: 374088, updated on 14-Feb-2019

    Summary

    Symbol
    IMPG1provided by CGNC
    Full Name
    interphotoreceptor matrix proteoglycan 1provided by CGNC
    Primary source
    CGNC:11858
    See related
    Ensembl:ENSGALG00000015897
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs

    Genomic context

    See IMPG1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 3 NC_006090.5 (80394906..80452132)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 3 NC_006090.4 (80678617..80735783)
    102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) 3 NC_006090.3 (79802795..79856460)

    Chromosome 3 - NC_006090.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112532181 Neighboring gene uncharacterized LOC112532186 Neighboring gene uncharacterized LOC112532075 Neighboring gene myosin VI Neighboring gene SUMO1/sentrin specific peptidase 6

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    visual perception IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    interphotoreceptor matrix proteoglycan 1
    Names
    IMPG1
    SPACR
    sialoprotein associated with cones and rods

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204241.1NP_989572.1  interphotoreceptor matrix proteoglycan 1 precursor

      See identical proteins and their annotated locations for NP_989572.1

      Status: PROVISIONAL

      Source sequence(s)
      AB070714
      UniProtKB/Swiss-Prot
      Q8JIR8
      Related
      ENSGALP00000025572.3, ENSGALT00000025619.6
      Conserved Domains (1) summary
      pfam01390
      Location:738825
      SEA; SEA domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006090.5 Reference GRCg6a Primary Assembly

      Range
      80394906..80452132
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015284736.2XP_015140222.1  interphotoreceptor matrix proteoglycan 1 isoform X1

      Conserved Domains (1) summary
      pfam01390
      Location:738825
      SEA; SEA domain
    2. XM_015284737.2XP_015140223.1  interphotoreceptor matrix proteoglycan 1 isoform X1

      Conserved Domains (1) summary
      pfam01390
      Location:738825
      SEA; SEA domain
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