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    pitx2.S paired like homeodomain 2 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 373586, updated on 8-Apr-2017

    Summary

    Official Symbol
    pitx2.S
    Official Full Name
    paired like homeodomain 2 S homeolog
    Primary source
    Xenbase:XB-GENE-6253059
    Locus tag
    XELAEV_18009341mg
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    pitx2; xPtx2; XPtx2b; pitx2c; xpitx2; XPitx2B; pitx2-a; pitx2-b; pitx2.L

    Genomic context

    See pitx2.S in Genome Data Viewer
    Location:
    chromosome: 1S
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (56170003..56188602)

    Chromosome 1S - NC_030725.1Genomic Context describing neighboring genes Neighboring gene Pigy upstream reading frame S homeolog Neighboring gene uncharacterized LOC108706702 Neighboring gene uncharacterized LOC108706703 Neighboring gene uncharacterized LOC108706704 Neighboring gene glutamyl aminopeptidase S homeolog

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_030725.1 Chromosome 1S Reference Xenopus_laevis_v2 Primary Assembly

    Pathways from BioSystems

    • TGF-beta signaling pathway, organism-specific biosystem (from KEGG)
      TGF-beta signaling pathway, organism-specific biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
    • TGF-beta signaling pathway, conserved biosystem (from KEGG)
      TGF-beta signaling pathway, conserved biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...

    General protein information

    Preferred Names
    paired like homeodomain 2 S homeolog; paired-like homeodomain 2 L homeolog
    Names
    homeodomain transcription factor
    paired-like homeodomain transcription factor 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001085586.1NP_001079055.1  paired like homeodomain 2 S homeolog

      See identical proteins and their annotated locations for NP_001079055.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ005787
      UniProtKB/Swiss-Prot
      Q9PWR3
      Conserved Domains (2) summary
      pfam00046
      Location:90142
      Homeobox; Homeobox domain
      pfam03826
      Location:276293
      OAR; OAR domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v2 Primary Assembly

    Genomic

    1. NC_030725.1 Reference Xenopus_laevis_v2 Primary Assembly

      Range
      56170003..56188602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018232456.1XP_018087945.1  paired-like homeodomain 2 L homeolog isoform X2

    2. XM_018232448.1XP_018087937.1  paired-like homeodomain 2 L homeolog isoform X1

      UniProtKB/TrEMBL
      Q6GNM5
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