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    patj PATJ, crumbs cell polarity complex component [ Danio rerio (zebrafish) ]

    Gene ID: 368723, updated on 1-Aug-2018

    Summary

    Official Symbol
    patjprovided by ZNC
    Official Full Name
    PATJ, crumbs cell polarity complex componentprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030616-129
    See related
    Ensembl:ENSDARG00000024964 Vega:OTTDARG00000010063
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    inadl; wu:fc76h08; si:dz129i22.4; si:busm1-129i22.4
    Orthologs

    Genomic context

    See patj in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    50
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (16569848..16758991, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (16540665..16732712, complement)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene PDZK1 interacting protein 1 Neighboring gene T-cell acute lymphocytic leukemia 1 Neighboring gene si:dkey-38n4.2 Neighboring gene TM2 domain containing 1 Neighboring gene nuclear factor I/A Neighboring gene microRNA 2194

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • Tight junction, organism-specific biosystem (from KEGG)
      Tight junction, organism-specific biosystemTight junctions (TJs) are essential for establishing a selectively permeable barrier to diffusion through the paracellular space between neighboring cells. TJs are composed of at least three types of...
    • Tight junction, conserved biosystem (from KEGG)
      Tight junction, conserved biosystemTight junctions (TJs) are essential for establishing a selectively permeable barrier to diffusion through the paracellular space between neighboring cells. TJs are composed of at least three types of...

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    inaD-like protein
    Names
    InaD-like
    PDZ domain
    mpdz
    mupp1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127185.1NP_001120657.1  inaD-like protein

      Status: PROVISIONAL

      Source sequence(s)
      AL929239, BX322568
      UniProtKB/TrEMBL
      Q1LXN3
      Related
      ENSDARP00000035306.7, ENSDART00000036467.8
      Conserved Domains (4) summary
      pfam09045
      Location:1269
      L27_2; L27_2
      smart00228
      Location:14641549
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:17461830
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam16667
      Location:13981463
      MPDZ_u10; Unstructured region 10 on multiple PDZ protein

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      16569848..16758991 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009296230.3XP_009294505.1  inaD-like protein isoform X2

      Conserved Domains (4) summary
      pfam09045
      Location:1269
      L27_2; L27_2
      smart00228
      Location:14441529
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:18091893
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam16667
      Location:13781443
      MPDZ_u10; Unstructured region 10 on multiple PDZ protein
    2. XM_009296231.3XP_009294506.1  inaD-like protein isoform X3

      Conserved Domains (4) summary
      pfam09045
      Location:1269
      L27_2; L27_2
      smart00228
      Location:14641549
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:18001884
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam16667
      Location:13981463
      MPDZ_u10; Unstructured region 10 on multiple PDZ protein
    3. XM_005161703.4XP_005161760.1  inaD-like protein isoform X1

      See identical proteins and their annotated locations for XP_005161760.1

      Related
      ENSDARP00000157175.1, ENSDART00000191880.1
      Conserved Domains (4) summary
      pfam09045
      Location:1269
      L27_2; L27_2
      smart00228
      Location:14641549
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:18291913
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam16667
      Location:13981463
      MPDZ_u10; Unstructured region 10 on multiple PDZ protein
    4. XM_009296229.3XP_009294504.1  inaD-like protein isoform X1

      See identical proteins and their annotated locations for XP_009294504.1

      Conserved Domains (4) summary
      pfam09045
      Location:1269
      L27_2; L27_2
      smart00228
      Location:14641549
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:18291913
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam16667
      Location:13981463
      MPDZ_u10; Unstructured region 10 on multiple PDZ protein
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