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    Zbtb40 zinc finger and BTB domain containing 40 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362635, updated on 21-Jul-2018

    Summary

    Official Symbol
    Zbtb40provided by RGD
    Official Full Name
    zinc finger and BTB domain containing 40provided by RGD
    Primary source
    RGD:1309866
    See related
    Ensembl:ENSRNOG00000022039
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309866
    Expression
    Biased expression in Thymus (RPKM 49.0), Adrenal (RPKM 39.1) and 9 other tissues See more
    Orthologs

    Genomic context

    See Zbtb40 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (155343823..155411086, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (159106436..159175098, complement)

    Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene complement C1q A chain Neighboring gene Eph receptor A8 Neighboring gene uncharacterized LOC102552931 Neighboring gene uncharacterized LOC102553030

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cellular response to DNA damage stimulus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cellular response to DNA damage stimulus ISO
    Inferred from Sequence Orthology
    more info
     
    cellular response to DNA damage stimulus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    zinc finger and BTB domain-containing protein 40

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191871.1NP_001178800.1  zinc finger and BTB domain-containing protein 40

      Status: PROVISIONAL

      Source sequence(s)
      AC094067
      Conserved Domains (7) summary
      smart00225
      Location:25116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8691122
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:853873
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:968986
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:9941016
      zf-C2H2; Zinc finger, C2H2 type
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:922947
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

      Range
      155343823..155411086 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006239232.3XP_006239294.1  zinc finger and BTB domain-containing protein 40 isoform X3

      UniProtKB/TrEMBL
      D4A365
      Related
      ENSRNOP00000035665.6, ENSRNOT00000033670.6
      Conserved Domains (7) summary
      smart00225
      Location:25116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8691121
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:853873
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:967985
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:9931015
      zf-C2H2; Zinc finger, C2H2 type
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:922947
      zf-H2C2_2; Zinc-finger double domain
    2. XM_008764268.2XP_008762490.1  zinc finger and BTB domain-containing protein 40 isoform X1

      See identical proteins and their annotated locations for XP_008762490.1

      Conserved Domains (6) summary
      smart00225
      Location:25116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8691122
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:853873
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:968986
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:922947
      zf-H2C2_2; Zinc-finger double domain
    3. XM_017593522.1XP_017449011.1  zinc finger and BTB domain-containing protein 40 isoform X1

      Conserved Domains (6) summary
      smart00225
      Location:25116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8691122
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:853873
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:968986
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:922947
      zf-H2C2_2; Zinc-finger double domain
    4. XM_008764269.2XP_008762491.1  zinc finger and BTB domain-containing protein 40 isoform X2

      Conserved Domains (6) summary
      smart00225
      Location:25116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8691121
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:853873
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:967985
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:922947
      zf-H2C2_2; Zinc-finger double domain
    5. XM_008764263.2XP_008762485.1  zinc finger and BTB domain-containing protein 40 isoform X1

      See identical proteins and their annotated locations for XP_008762485.1

      Conserved Domains (6) summary
      smart00225
      Location:25116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8691122
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:853873
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:968986
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:922947
      zf-H2C2_2; Zinc-finger double domain
    6. XM_017593521.1XP_017449010.1  zinc finger and BTB domain-containing protein 40 isoform X1

      Conserved Domains (6) summary
      smart00225
      Location:25116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8691122
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:853873
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:968986
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:922947
      zf-H2C2_2; Zinc-finger double domain
    7. XM_008764265.2XP_008762487.1  zinc finger and BTB domain-containing protein 40 isoform X1

      See identical proteins and their annotated locations for XP_008762487.1

      Conserved Domains (6) summary
      smart00225
      Location:25116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8691122
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:853873
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:968986
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:922947
      zf-H2C2_2; Zinc-finger double domain
    8. XM_008764267.2XP_008762489.1  zinc finger and BTB domain-containing protein 40 isoform X1

      See identical proteins and their annotated locations for XP_008762489.1

      Conserved Domains (6) summary
      smart00225
      Location:25116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8691122
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:853873
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:968986
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:922947
      zf-H2C2_2; Zinc-finger double domain
    9. XM_008764266.2XP_008762488.1  zinc finger and BTB domain-containing protein 40 isoform X1

      See identical proteins and their annotated locations for XP_008762488.1

      Conserved Domains (6) summary
      smart00225
      Location:25116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8691122
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:853873
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:968986
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:922947
      zf-H2C2_2; Zinc-finger double domain
    10. XM_008764264.2XP_008762486.1  zinc finger and BTB domain-containing protein 40 isoform X1

      See identical proteins and their annotated locations for XP_008762486.1

      Conserved Domains (6) summary
      smart00225
      Location:25116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8691122
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:853873
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:968986
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:922947
      zf-H2C2_2; Zinc-finger double domain
    11. XM_006239233.3XP_006239295.1  zinc finger and BTB domain-containing protein 40 isoform X4

      Conserved Domains (7) summary
      smart00225
      Location:25116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8691073
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:853873
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:968986
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:9941016
      zf-C2H2; Zinc finger, C2H2 type
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:922947
      zf-H2C2_2; Zinc-finger double domain

    Alternate Rn_Celera

    Genomic

    1. AC_000073.1 Alternate Rn_Celera

      Range
      147617373..147681459 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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