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    Trit1 tRNA isopentenyltransferase 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362586, updated on 21-Jul-2018

    Summary

    Official Symbol
    Trit1provided by RGD
    Official Full Name
    tRNA isopentenyltransferase 1provided by RGD
    Primary source
    RGD:1304781
    See related
    Ensembl:ENSRNOG00000014274
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Spleen (RPKM 104.0), Adrenal (RPKM 97.3) and 9 other tissues See more
    Orthologs

    Genomic context

    See Trit1 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (140711943..140756893)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (144502459..144547373)

    Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100909490 Neighboring gene major facilitator superfamily domain containing 2A Neighboring gene MYCL proto-oncogene, bHLH transcription factor Neighboring gene bone morphogenetic protein 8b Neighboring gene 3-oxoacid CoA transferase 2A Neighboring gene peptidylprolyl isomerase E

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    tRNA dimethylallyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    tRNA dimethylallyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    tRNA modification IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    tRNA dimethylallyltransferase, mitochondrial
    NP_001102146.1
    XP_006238866.1
    XP_017448985.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108676.1NP_001102146.1  tRNA dimethylallyltransferase, mitochondrial

      See identical proteins and their annotated locations for NP_001102146.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473968
      UniProtKB/TrEMBL
      D4A175
      Related
      ENSRNOP00000019587.4, ENSRNOT00000019587.4
      Conserved Domains (3) summary
      PLN02748
      Location:25440
      PLN02748; tRNA dimethylallyltransferase
      PRK00091
      Location:24345
      miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
      pfam12171
      Location:407431
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

      Range
      140711943..140756893
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006238804.3XP_006238866.1  tRNA dimethylallyltransferase, mitochondrial isoform X1

      Conserved Domains (3) summary
      PLN02748
      Location:25428
      PLN02748; tRNA dimethylallyltransferase
      PRK00091
      Location:24333
      miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
      pfam12171
      Location:395419
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    2. XM_017593496.1XP_017448985.1  tRNA dimethylallyltransferase, mitochondrial isoform X2

    Alternate Rn_Celera

    Genomic

    1. AC_000073.1 Alternate Rn_Celera

      Range
      133833435..133876861
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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