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    Ttc4 tetratricopeptide repeat domain 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362556, updated on 21-Jul-2018

    Summary

    Official Symbol
    Ttc4provided by RGD
    Official Full Name
    tetratricopeptide repeat domain 4provided by RGD
    Primary source
    RGD:1308529
    See related
    Ensembl:ENSRNOG00000042467
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Kidney (RPKM 56.0), Heart (RPKM 53.7) and 9 other tissues See more
    Orthologs

    Genomic context

    See Ttc4 in Genome Data Viewer
    Location:
    5q34
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (126264758..126282431, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (130109141..130127441, complement)

    Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene lymphocyte expansion molecule Neighboring gene tetratricopeptide repeat domain 22 Neighboring gene prolyl-tRNA synthetase 2, mitochondrial Neighboring gene maestro heat-like repeat family member 7 Neighboring gene family with sequence similarity 151, member A Neighboring gene acyl-CoA thioesterase 11

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    tetratricopeptide repeat protein 4

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013214.1NP_001013232.1  tetratricopeptide repeat protein 4

      See identical proteins and their annotated locations for NP_001013232.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083794
      UniProtKB/TrEMBL
      Q5XI93
      Conserved Domains (2) summary
      sd00006
      Location:79107
      TPR; TPR repeat [structural motif]
      pfam13414
      Location:78148
      TPR_11; TPR repeat

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

      Range
      126264758..126282431 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006238519.3XP_006238581.1  tetratricopeptide repeat protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A140UHY1
      Related
      ENSRNOP00000010229.5, ENSRNOT00000010229.6
      Conserved Domains (2) summary
      sd00006
      Location:79107
      TPR; TPR repeat [structural motif]
      pfam13414
      Location:78148
      TPR_11; TPR repeat

    Alternate Rn_Celera

    Genomic

    1. AC_000073.1 Alternate Rn_Celera

      Range
      120201186..120210532 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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