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    Pfdn1 prefoldin subunit 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361310, updated on 2-Oct-2018

    Summary

    Official Symbol
    Pfdn1provided by RGD
    Official Full Name
    prefoldin subunit 1provided by RGD
    Primary source
    RGD:1305603
    See related
    Ensembl:ENSRNOG00000018653
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Muscle (RPKM 586.5), Heart (RPKM 395.1) and 9 other tissues See more
    Orthologs

    Genomic context

    See Pfdn1 in Genome Data Viewer
    Location:
    18p11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (29233987..29290447, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 18 NC_005117.3 (28940034..28997334, complement)

    Chromosome 18 - NC_005117.4Genomic Context describing neighboring genes Neighboring gene IgA-inducing protein Neighboring gene cysteine-rich transmembrane module containing 1 Neighboring gene heparin-binding EGF-like growth factor Neighboring gene solute carrier family 4 member 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    protein binding involved in protein folding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding involved in protein folding ISO
    Inferred from Sequence Orthology
    more info
     
    unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    B cell activation ISO
    Inferred from Sequence Orthology
    more info
     
    actin cytoskeleton organization ISO
    Inferred from Sequence Orthology
    more info
     
    cerebellum development ISO
    Inferred from Sequence Orthology
    more info
     
    protein folding IEA
    Inferred from Electronic Annotation
    more info
     
    telencephalon development ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    prefoldin complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    prefoldin subunit 1
    Names
    prefoldin 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108427.1NP_001101897.1  prefoldin subunit 1

      See identical proteins and their annotated locations for NP_001101897.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473974
      UniProtKB/TrEMBL
      D3ZX38
      Related
      ENSRNOP00000025353.4, ENSRNOT00000025353.5
      Conserved Domains (1) summary
      pfam01920
      Location:14117
      Prefoldin_2; Prefoldin subunit

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005117.4 Reference Rnor_6.0 Primary Assembly

      Range
      29233987..29290447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000086.1 Alternate Rn_Celera

      Range
      27742853..27795443 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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