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    rcbtb1 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 336007, updated on 1-Aug-2018

    Summary

    Official Symbol
    rcbtb1provided by ZNC
    Official Full Name
    regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-7951
    See related
    Ensembl:ENSDARG00000036645 Vega:OTTDARG00000019484
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    fj43a07; zgc:56037; wu:fj43a07
    Orthologs

    Genomic context

    See rcbtb1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (46635236..46650083, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (45944004..45958835, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene calcium binding protein 39-like Neighboring gene cytidine and dCMP deaminase domain containing 1 Neighboring gene ADP-ribosylation factor-like 11 Neighboring gene EBP like

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    blood vessel development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    retina vasculature development in camera-type eye IGI
    Inferred from Genetic Interaction
    more info
    PubMed 

    General protein information

    Preferred Names
    RCC1 and BTB domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199991.1NP_956285.1  RCC1 and BTB domain-containing protein 1

      See identical proteins and their annotated locations for NP_956285.1

      Status: PROVISIONAL

      Source sequence(s)
      BC045877
      UniProtKB/TrEMBL
      Q7ZVG0
      Related
      ENSDARP00000053221.5, OTTDARP00000019836, ENSDART00000053222.7, OTTDART00000023949
      Conserved Domains (5) summary
      smart00225
      Location:371467
      BTB; Broad-Complex, Tramtrack and Bric a brac
      cd14821
      Location:467525
      SPOP_C_like; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
      pfam00415
      Location:199248
      RCC1; Regulator of chromosome condensation (RCC1) repeat
      pfam00651
      Location:360464
      BTB; BTB/POZ domain
      pfam13540
      Location:77106
      RCC1_2; Regulator of chromosome condensation (RCC1) repeat

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      46635236..46650083 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005170970.4XP_005171027.1  RCC1 and BTB domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      B8A4R1
      Conserved Domains (5) summary
      smart00225
      Location:371467
      BTB; Broad-Complex, Tramtrack and Bric a brac
      cd14821
      Location:467525
      SPOP_C_like; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
      pfam00415
      Location:199248
      RCC1; Regulator of chromosome condensation (RCC1) repeat
      pfam00651
      Location:360464
      BTB; BTB/POZ domain
      pfam13540
      Location:77106
      RCC1_2; Regulator of chromosome condensation (RCC1) repeat
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