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    clic1 chloride intracellular channel 1 [ Danio rerio (zebrafish) ]

    Gene ID: 324481, updated on 1-Aug-2018

    Summary

    Official Symbol
    clic1provided by ZNC
    Official Full Name
    chloride intracellular channel 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3202
    See related
    Ensembl:ENSDARG00000103340 Vega:OTTDARG00000034791
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zgc:77044; wu:fc30e04
    Orthologs

    Genomic context

    See clic1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (18758266..18765909)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (17470337..17477980)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene sperm acrosome associated 4 like Neighboring gene lymphocyte antigen-6, epidermis Neighboring gene dimethylarginine dimethylaminohydrolase 2 Neighboring gene carnitine O-acetyltransferase b

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    chloride channel activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    chloride channel activity IEA
    Inferred from Electronic Annotation
    more info
     
    voltage-gated ion channel activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    chloride transport IEA
    Inferred from Electronic Annotation
    more info
     
    ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    chloride channel complex IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    chloride intracellular channel protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_212682.1NP_997847.1  chloride intracellular channel protein 1

      See identical proteins and their annotated locations for NP_997847.1

      Status: PROVISIONAL

      Source sequence(s)
      BC066618
      UniProtKB/TrEMBL
      Q6NYF2
      Related
      ENSDARP00000139434.1, OTTDARP00000038728, ENSDART00000158935.2, OTTDART00000049357
      Conserved Domains (3) summary
      TIGR00862
      Location:6241
      O-ClC; intracellular chloride channel protein
      cd10300
      Location:100238
      GST_C_CLIC1; C-terminal, alpha helical domain of Chloride Intracellular Channel 1
      cd03061
      Location:393
      GST_N_CLIC; GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated ...

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      18758266..18765909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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