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    dnajc3a DnaJ (Hsp40) homolog, subfamily C, member 3a [ Danio rerio (zebrafish) ]

    Gene ID: 322544, updated on 1-Aug-2018

    Summary

    Official Symbol
    dnajc3aprovided by ZNC
    Official Full Name
    DnaJ (Hsp40) homolog, subfamily C, member 3aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1264
    See related
    Ensembl:ENSDARG00000041110 Vega:OTTDARG00000020811
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    dnajc3; zgc:56356; zgc:77731; wu:fb64f06
    Orthologs

    Genomic context

    See dnajc3a in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (29484046..29497885, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (29673300..29687139, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene heparan sulfate 6-O-sulfotransferase 3b Neighboring gene UDP-glucose glycoprotein glucosyltransferase 2 Neighboring gene si:dkey-46k9.4 Neighboring gene ferredoxin 1

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    chaperone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    misfolded protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    unfolded protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    protein folding in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    dnaJ homolog subfamily C member 3
    Names
    DnaJ (Hsp40) homolog, subfamily C, member 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199610.2NP_955904.2  dnaJ homolog subfamily C member 3

      See identical proteins and their annotated locations for NP_955904.2

      Status: PROVISIONAL

      Source sequence(s)
      BC065443
      UniProtKB/TrEMBL
      Q6P0U6
      Related
      ENSDARP00000060245.3, OTTDARP00000021501, ENSDART00000060246.4, OTTDART00000026180
      Conserved Domains (6) summary
      COG0484
      Location:391502
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      TIGR02552
      Location:262389
      LcrH_SycD; type III secretion low calcium response chaperone LcrH/SycD
      sd00006
      Location:3765
      TPR; TPR repeat [structural motif]
      pfam00226
      Location:394459
      DnaJ; DnaJ domain
      pfam00515
      Location:73104
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:38102
      TPR_11; TPR repeat

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      29484046..29497885 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394759.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      89161..103000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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