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    Hnrnpr heterogeneous nuclear ribonucleoprotein R [ Rattus norvegicus (Norway rat) ]

    Gene ID: 319110, updated on 5-Aug-2018

    Summary

    Official Symbol
    Hnrnprprovided by RGD
    Official Full Name
    heterogeneous nuclear ribonucleoprotein Rprovided by RGD
    Primary source
    RGD:631348
    See related
    Ensembl:ENSRNOG00000011910
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Hnrpr
    Summary
    mouse homolog is involved in mRNA editing, transport and splicing [RGD, Feb 2006]
    Annotation information
    Annotation category: partial on reference assembly
    Expression
    Biased expression in Thymus (RPKM 292.0), Lung (RPKM 237.3) and 9 other tissues See more
    Orthologs

    Genomic context

    See Hnrnpr in Genome Data Viewer
    Location:
    5q36
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (154668194..154699967)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (158435433..158467206)

    Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene RGD1564482 Neighboring gene zinc finger protein 46 Neighboring gene 5-hydroxytryptamine receptor 1D Neighboring gene leucine zipper protein 1 Neighboring gene similar to small inducible cytokine subfamily E, member 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    mRNA 3'-UTR binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    circadian rhythm IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    mRNA destabilization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of catalytic activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of mRNA catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    axon terminus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
     
    catalytic step 2 spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    dendrite IDA
    Inferred from Direct Assay
    more info
    PubMed 
    growth cone IDA
    Inferred from Direct Assay
    more info
    PubMed 
    NOT nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    ribonucleoprotein complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    heterogeneous nuclear ribonucleoprotein R

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175603.2NP_783193.2  heterogeneous nuclear ribonucleoprotein R

      See identical proteins and their annotated locations for NP_783193.2

      Status: PROVISIONAL

      Source sequence(s)
      BC093598
      UniProtKB/TrEMBL
      Q566E4
      Related
      ENSRNOP00000015971.6, ENSRNOT00000015971.7
      Conserved Domains (4) summary
      cd12488
      Location:244328
      RRM2_hnRNPR; RNA recognition motif 2 in vertebrate heterogeneous nuclear ribonucleoprotein R (hnRNP R)
      cd12494
      Location:340411
      RRM3_hnRNPR; RNA recognition motif 3 in vertebrate heterogeneous nuclear ribonucleoprotein R (hnRNP R)
      TIGR01648
      Location:106627
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cl17169
      Location:164242
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

      Range
      154668194..154699967
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000073.1 Alternate Rn_Celera

      Range
      146943785..146975518
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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