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    Copz1 coatomer protein complex, subunit zeta 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 315345, updated on 2-Oct-2018

    Summary

    Official Symbol
    Copz1provided by RGD
    Official Full Name
    coatomer protein complex, subunit zeta 1provided by RGD
    Primary source
    RGD:1306154
    See related
    Ensembl:ENSRNOG00000036835
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Kidney (RPKM 373.8), Liver (RPKM 306.1) and 9 other tissues See more
    Orthologs

    Genomic context

    See Copz1 in Genome Data Viewer
    Location:
    7q36
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (144900050..144926299)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 7 NC_005106.3 (142680779..142706987)

    Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1 Neighboring gene nuclear factor, erythroid 2 Neighboring gene microRNA 148b Neighboring gene G protein-coupled receptor 84 Neighboring gene zinc finger protein 385A

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    intra-Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    intra-Golgi vesicle-mediated transport ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    retrograde vesicle-mediated transport, Golgi to ER IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    toxin transport IEA
    Inferred from Electronic Annotation
    more info
     
    toxin transport ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    COPI vesicle coat IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    COPI vesicle coat ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108117.1NP_001101587.1  coatomer subunit zeta-1

      See identical proteins and their annotated locations for NP_001101587.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474035
      UniProtKB/TrEMBL
      D4A8T3
      Related
      ENSRNOP00000059082.1, ENSRNOT00000065270.2
      Conserved Domains (1) summary
      pfam01217
      Location:12153
      Clat_adaptor_s; Clathrin adaptor complex small chain

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005106.4 Reference Rnor_6.0 Primary Assembly

      Range
      144900050..144926299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017594903.1XP_017450392.1  coatomer subunit zeta-1 isoform X1

      Conserved Domains (1) summary
      pfam01217
      Location:12153
      Clat_adaptor_s; Clathrin adaptor complex small chain

    Alternate Rn_Celera

    Genomic

    1. AC_000075.1 Alternate Rn_Celera

      Range
      130835003..130860877
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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