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    Lrrc23 leucine rich repeat containing 23 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 312707, updated on 2-Oct-2018

    Summary

    Official Symbol
    Lrrc23provided by RGD
    Official Full Name
    leucine rich repeat containing 23provided by RGD
    Primary source
    RGD:1304779
    See related
    Ensembl:ENSRNOG00000026309
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Lrpb7
    Expression
    Biased expression in Testes (RPKM 159.8), Thymus (RPKM 111.8) and 4 other tissues See more
    Orthologs

    Genomic context

    See Lrrc23 in Genome Data Viewer
    Location:
    4q42
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (157294386..157304590, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 4 NC_005103.3 (224311985..224322180, complement)

    Chromosome 4 - NC_005103.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102553919 Neighboring gene atrophin 1 Neighboring gene enolase 2 Neighboring gene splA/ryanodine receptor domain and SOCS box containing 2 Neighboring gene triosephosphate isomerase 1 Neighboring gene ubiquitin specific peptidase 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    cilium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    motile cilium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    motile cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    leucine-rich repeat-containing protein 23
    Names
    leucine rich protein, B7
    neuron-specific enolase

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013165.2NP_001013183.2  leucine-rich repeat-containing protein 23

      See identical proteins and their annotated locations for NP_001013183.2

      Status: VALIDATED

      Source sequence(s)
      BC079028, CV118996
      UniProtKB/TrEMBL
      G3V9K7, Q6AYI9
      Conserved Domains (3) summary
      sd00033
      Location:7594
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:202244
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:202259
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005103.4 Reference Rnor_6.0 Primary Assembly

      Range
      157294386..157304590 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006237360.3XP_006237422.1  leucine-rich repeat-containing protein 23 isoform X2

      See identical proteins and their annotated locations for XP_006237422.1

      Conserved Domains (3) summary
      sd00033
      Location:5677
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:163205
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:163220
      LRR_8; Leucine rich repeat
    2. XM_006237355.3XP_006237417.1  leucine-rich repeat-containing protein 23 isoform X1

      See identical proteins and their annotated locations for XP_006237417.1

      UniProtKB/TrEMBL
      G3V9K7
      Related
      ENSRNOP00000051124.2, ENSRNOT00000051613.3
      Conserved Domains (3) summary
      sd00033
      Location:7594
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:202244
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:202259
      LRR_8; Leucine rich repeat
    3. XM_006237361.3XP_006237423.1  leucine-rich repeat-containing protein 23 isoform X2

      See identical proteins and their annotated locations for XP_006237423.1

      Conserved Domains (3) summary
      sd00033
      Location:5677
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:163205
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:163220
      LRR_8; Leucine rich repeat
    4. XM_006237356.3XP_006237418.1  leucine-rich repeat-containing protein 23 isoform X1

      See identical proteins and their annotated locations for XP_006237418.1

      UniProtKB/TrEMBL
      G3V9K7
      Conserved Domains (3) summary
      sd00033
      Location:7594
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:202244
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:202259
      LRR_8; Leucine rich repeat

    Alternate Rn_Celera

    Genomic

    1. AC_000072.1 Alternate Rn_Celera

      Range
      146319344..146329515 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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