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    Cstf2t cleavage stimulation factor subunit 2, tau variant [ Rattus norvegicus (Norway rat) ]

    Gene ID: 309338, updated on 18-Apr-2019

    Summary

    Official Symbol
    Cstf2tprovided by RGD
    Official Full Name
    cleavage stimulation factor subunit 2, tau variantprovided by RGD
    Primary source
    RGD:1310026
    See related
    Ensembl:ENSRNOG00000050289
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Orthologs

    Genomic context

    See Cstf2t in Genome Data Viewer
    Location:
    1q52
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (249574954..249578520)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (256813751..256817317)

    Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene cAMP-dependent protein kinase catalytic subunit PRKX-like Neighboring gene dickkopf WNT signaling pathway inhibitor 1 Neighboring gene protein kinase cGMP-dependent 1 Neighboring gene uncharacterized LOC103691334 Neighboring gene APOBEC1 complementation factor

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    pre-mRNA cleavage required for polyadenylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    mRNA cleavage and polyadenylation specificity factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    cleavage stimulation factor subunit 2 tau variant
    Names
    cleavage stimulation factor subunit 2 tau
    cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
    cleavage stimulation factor, 3' pre-RNA, subunit 2, tau

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107586.1NP_001101056.1  cleavage stimulation factor subunit 2 tau variant

      See identical proteins and their annotated locations for NP_001101056.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473953
      UniProtKB/TrEMBL
      M0R6B9
      Related
      ENSRNOP00000064966.1, ENSRNOT00000074100.2
      Conserved Domains (4) summary
      COG0724
      Location:16109
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12671
      Location:1892
      RRM_CSTF2_CSTF2T; RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), cleavage stimulation factor subunit 2 tau variant (CSTF2T) and similar proteins
      pfam14304
      Location:585625
      CSTF_C; Transcription termination and cleavage factor C-terminal
      pfam14327
      Location:113191
      CSTF2_hinge; Hinge domain of cleavage stimulation factor subunit 2

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

      Range
      249574954..249578520
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000069.1 Alternate Rn_Celera

      Range
      226077478..226081044
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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