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    Zfp821 zinc finger protein 821 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 307834, updated on 21-Jul-2018

    Summary

    Official Symbol
    Zfp821provided by RGD
    Official Full Name
    zinc finger protein 821provided by RGD
    Primary source
    RGD:1306674
    See related
    Ensembl:ENSRNOG00000000262
    Gene type
    unknown
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Znf821; RGD1306674
    Expression
    Biased expression in Thymus (RPKM 88.4), Brain (RPKM 76.7) and 9 other tissues See more
    Orthologs

    Genomic context

    See Zfp821 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (41940970..41959843, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 19 NC_005118.3 (52765874..52784088, complement)

    Chromosome 19 - NC_005118.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102554624 Neighboring gene alanine and glycine-rich protein-like Neighboring gene IST1, ESCRT-III associated factor Neighboring gene polycystic kidney disease 1 like 3-like Neighboring gene dihydroorotate dehydrogenase (quinone)

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription regulatory region DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005118.4 Reference Rnor_6.0 Primary Assembly

      Range
      41940970..41959843 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001842307.1 RNA Sequence

    2. XR_001842310.1 RNA Sequence

      Related
      ENSRNOT00000000279.6
    3. XR_001842308.1 RNA Sequence

    4. XR_001842306.1 RNA Sequence

    5. XR_361846.3 RNA Sequence

    6. XR_597254.2 RNA Sequence

    7. XR_001842309.1 RNA Sequence

    8. XR_001842305.1 RNA Sequence

    9. XR_001842304.1 RNA Sequence

    10. XR_597253.2 RNA Sequence

    11. XR_597255.2 RNA Sequence

    Alternate Rn_Celera

    Genomic

    1. AC_000087.1 Alternate Rn_Celera

      Range
      37085232..37102591
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_598494.1 RNA Sequence

    2. XR_085684.4 RNA Sequence

    3. XR_342335.2 RNA Sequence

    4. XR_598495.2 RNA Sequence

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