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    Gpc5 glypican 5 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 306157, updated on 5-Aug-2018

    Summary

    Official Symbol
    Gpc5provided by RGD
    Official Full Name
    glypican 5provided by RGD
    Primary source
    RGD:1308835
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Brain (RPKM 101.8), Thymus (RPKM 11.6) and 1 other tissue See more
    Orthologs

    Genomic context

    See Gpc5 in Genome Data Viewer
    Location:
    15q23-q24
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (100283131..101776838)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 15 NC_005114.3 (103739948..104456749) , (105221065..105224752)

    Chromosome 15 - NC_005114.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102548462 Neighboring gene uncharacterized LOC108353028 Neighboring gene 40S ribosomal protein S16-like Neighboring gene microRNA 92a-1 Neighboring gene 60S ribosomal protein L10-like Neighboring gene uncharacterized LOC103693784 Neighboring gene glypican 6 Neighboring gene transmembrane protein 11, mitochondrial-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107285.2NP_001100755.2  glypican-5 precursor

      Status: VALIDATED

      Source sequence(s)
      AABR07019341, AABR07019345, AABR07019348, AABR07019351, AABR07019366
      Conserved Domains (1) summary
      pfam01153
      Location:12569
      Glypican; Glypican

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005114.4 Reference Rnor_6.0 Primary Assembly

      Range
      100283131..101776838
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000083.1 Alternate Rn_Celera

      Range
      91103971..92504072
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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