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    MGC105649 hypothetical LOC302884 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 302884, updated on 13-Aug-2019

    Summary

    Symbol
    MGC105649provided by RGD
    Full Name
    hypothetical LOC302884provided by RGD
    Primary source
    RGD:1359583
    See related
    Ensembl:ENSRNOG00000050251
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Nmes1
    Expression
    Biased expression in Testes (RPKM 173.2), Spleen (RPKM 94.1) and 7 other tissues See more
    Orthologs

    Genomic context

    See MGC105649 in Genome Data Viewer
    Location:
    3q35
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (114772603..114776156)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 3 NC_005102.3 (121310711..121314264)

    Chromosome 3 - NC_005102.4Genomic Context describing neighboring genes Neighboring gene glycine amidinotransferase Neighboring gene spermatogenesis associated 5-like 1 Neighboring gene microRNA 147 Neighboring gene solute carrier family 30 member 4 Neighboring gene translation initiation factor IF-2-like Neighboring gene biogenesis of lysosomal organelles complex 1 subunit 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    Clone Names

    • MGC105649

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    contributes_to cytochrome-c oxidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    electron transport chain IEA
    Inferred from Electronic Annotation
    more info
     
    proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    response to bacterium IEA
    Inferred from Electronic Annotation
    more info
     
    response to bacterium ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    mitochondrial respiratory chain complex IV IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    normal mucosa of esophagus-specific gene 1 protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008518.2NP_001008518.1  normal mucosa of esophagus-specific gene 1 protein

      See identical proteins and their annotated locations for NP_001008518.1

      Status: VALIDATED

      Source sequence(s)
      BC086337, CB585387
      UniProtKB/Swiss-Prot
      Q5RK28
      Related
      ENSRNOP00000065010.1, ENSRNOT00000073569.1
      Conserved Domains (1) summary
      pfam06522
      Location:976
      B12D; NADH-ubiquinone reductase complex 1 MLRQ subunit

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005102.4 Reference Rnor_6.0 Primary Assembly

      Range
      114772603..114776156
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000071.1 Alternate Rn_Celera

      Range
      108597738..108601531
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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