Format

Send to:

Choose Destination
    • Showing Current items.

    Suv39h1 suppressor of variegation 3-9 homolog 1 (Drosophila) [ Rattus norvegicus (Norway rat) ]

    Gene ID: 302553, updated on 5-Aug-2018

    Summary

    Official Symbol
    Suv39h1provided by RGD
    Official Full Name
    suppressor of variegation 3-9 homolog 1 (Drosophila)provided by RGD
    Primary source
    RGD:1565028
    See related
    Ensembl:ENSRNOG00000039576
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565028
    Expression
    Biased expression in Thymus (RPKM 82.6), Spleen (RPKM 61.4) and 9 other tissues See more
    Orthologs

    Genomic context

    See Suv39h1 in Genome Data Viewer
    Location:
    Xq12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (15171280..15185191)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) X NC_005120.3 (15953577..15967467)

    Chromosome X - NC_005120.4Genomic Context describing neighboring genes Neighboring gene WD repeat domain 13 Neighboring gene Wiskott-Aldrich syndrome Neighboring gene glyoxalase domain containing 5 Neighboring gene annexin A7-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    histone methyltransferase activity (H3-K9 specific) IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    protein N-terminus binding IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    cellular response to DNA damage stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to hypoxia IEA
    Inferred from Electronic Annotation
    more info
     
    chromatin silencing at rDNA IEA
    Inferred from Electronic Annotation
    more info
     
    histone H3-K9 methylation IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    chromatin silencing complex IEA
    Inferred from Electronic Annotation
    more info
     
    rDNA heterochromatin IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    histone-lysine N-methyltransferase SUV39H1
    NP_001100426.1
    XP_006256765.1
    XP_006256766.1
    XP_006256767.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106956.1NP_001100426.1  histone-lysine N-methyltransferase SUV39H1

      See identical proteins and their annotated locations for NP_001100426.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474078
      UniProtKB/TrEMBL
      G3V6S6
      Related
      ENSRNOP00000008399.5, ENSRNOT00000008399.5
      Conserved Domains (3) summary
      smart00468
      Location:133228
      PreSET; N-terminal to some SET domains
      smart00317
      Location:244367
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      pfam00385
      Location:4592
      Chromo; Chromo (CHRromatin Organization MOdifier) domain

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005120.4 Reference Rnor_6.0 Primary Assembly

      Range
      15171280..15185191
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006256705.3XP_006256767.1  histone-lysine N-methyltransferase SUV39H1 isoform X3

      See identical proteins and their annotated locations for XP_006256767.1

      UniProtKB/TrEMBL
      B1H256
      Conserved Domains (3) summary
      smart00468
      Location:132227
      PreSET; N-terminal to some SET domains
      smart00317
      Location:243366
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      pfam00385
      Location:4491
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
    2. XM_006256703.3XP_006256765.1  histone-lysine N-methyltransferase SUV39H1 isoform X1

      See identical proteins and their annotated locations for XP_006256765.1

      UniProtKB/TrEMBL
      G3V6S6
      Conserved Domains (3) summary
      smart00468
      Location:133228
      PreSET; N-terminal to some SET domains
      smart00317
      Location:244367
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      pfam00385
      Location:4592
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
    3. XM_006256704.3XP_006256766.1  histone-lysine N-methyltransferase SUV39H1 isoform X2

      See identical proteins and their annotated locations for XP_006256766.1

      UniProtKB/TrEMBL
      B1H256
      Conserved Domains (3) summary
      smart00468
      Location:132227
      PreSET; N-terminal to some SET domains
      smart00317
      Location:243366
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      pfam00385
      Location:4491
      Chromo; Chromo (CHRromatin Organization MOdifier) domain

    RNA

    1. XR_362375.3 RNA Sequence

    Alternate Rn_Celera

    Genomic

    1. AC_000089.1 Alternate Rn_Celera

      Range
      14505907..14518876
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center