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    Mrpl30 mitochondrial ribosomal protein L30 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 301352, updated on 12-Aug-2018

    Summary

    Official Symbol
    Mrpl30provided by RGD
    Official Full Name
    mitochondrial ribosomal protein L30provided by RGD
    Primary source
    RGD:1308196
    See related
    Ensembl:ENSRNOG00000049330
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Heart (RPKM 94.9), Muscle (RPKM 78.7) and 9 other tissues See more

    Genomic context

    See Mrpl30 in Genome Data Viewer
    Location:
    9q21
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (44483809..44496116)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 9 NC_005108.3 (44181199..44193496)

    Chromosome 9 - NC_005108.4Genomic Context describing neighboring genes Neighboring gene lipoyltransferase 1 Neighboring gene microtubule interacting and trafficking domain containing 1 Neighboring gene lysozyme G2 Neighboring gene lysozyme G1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrial large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrial large ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    39S ribosomal protein L30, mitochondrial
    Names
    L30mt
    MRP-L30

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106903.1NP_001100373.1  39S ribosomal protein L30, mitochondrial precursor

      See identical proteins and their annotated locations for NP_001100373.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473965
      UniProtKB/Swiss-Prot
      P0C2C1
      UniProtKB/TrEMBL
      B5DEY4
      Conserved Domains (1) summary
      cd01658
      Location:67120
      Ribosomal_L30; Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that ...

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005108.4 Reference Rnor_6.0 Primary Assembly

      Range
      44483809..44496116
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008766999.2XP_008765221.1  39S ribosomal protein L30, mitochondrial isoform X1

      See identical proteins and their annotated locations for XP_008765221.1

      UniProtKB/Swiss-Prot
      P0C2C1
      UniProtKB/TrEMBL
      B5DEY4
      Related
      ENSRNOP00000068686.1, ENSRNOT00000083245.1
      Conserved Domains (1) summary
      cd01658
      Location:67120
      Ribosomal_L30; Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that ...
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