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    Cnnm3 cyclin and CBS domain divalent metal cation transport mediator 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 301345, updated on 21-Jul-2018

    Summary

    Official Symbol
    Cnnm3provided by RGD
    Official Full Name
    cyclin and CBS domain divalent metal cation transport mediator 3provided by RGD
    Primary source
    RGD:1307926
    See related
    Ensembl:ENSRNOG00000016032
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Kidney (RPKM 102.6), Adrenal (RPKM 83.7) and 9 other tissues See more
    Orthologs

    Genomic context

    See Cnnm3 in Genome Data Viewer
    Location:
    9q21
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (43093120..43108486)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 9 NC_005108.3 (42747044..42762392)

    Chromosome 9 - NC_005108.4Genomic Context describing neighboring genes Neighboring gene lectin, mannose-binding 2-like Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 4 Neighboring gene ankyrin repeat domain 23 Neighboring gene ankyrin repeat domain 39

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    metal transporter CNNM3
    Names
    cyclin M3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106901.2NP_001100371.2  metal transporter CNNM3 precursor

      Status: VALIDATED

      Source sequence(s)
      AABR07067401
      UniProtKB/TrEMBL
      D4ACK7
      Related
      ENSRNOP00000021591.4, ENSRNOT00000021592.6
      Conserved Domains (1) summary
      cd04590
      Location:327447
      CBS_pair_CorC_HlyC_assoc; This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in ...

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005108.4 Reference Rnor_6.0 Primary Assembly

      Range
      43093120..43108486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006244757.3XP_006244819.1  metal transporter CNNM3 isoform X2

      Conserved Domains (1) summary
      cd04590
      Location:327447
      CBS_pair_CorC_HlyC_assoc; This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in ...
    2. XM_006244756.3XP_006244818.1  metal transporter CNNM3 isoform X1

      Conserved Domains (1) summary
      cd04590
      Location:327447
      CBS_pair_CorC_HlyC_assoc; This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in ...

    Alternate Rn_Celera

    Genomic

    1. AC_000077.1 Alternate Rn_Celera

      Range
      36521842..36537115
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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