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    Ift46 intraflagellar transport 46 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300675, updated on 2-Oct-2018

    Summary

    Official Symbol
    Ift46provided by RGD
    Official Full Name
    intraflagellar transport 46provided by RGD
    Primary source
    RGD:1307682
    See related
    Ensembl:ENSRNOG00000013919
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307682
    Expression
    Biased expression in Testes (RPKM 195.5), Kidney (RPKM 118.5) and 9 other tissues See more
    Orthologs

    Genomic context

    See Ift46 in Genome Data Viewer
    Location:
    8q22
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (49075978..49097689)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 8 NC_005107.3 (47695039..47716197)

    Chromosome 8 - NC_005107.4Genomic Context describing neighboring genes Neighboring gene trehalase Neighboring gene pleckstrin homology-like domain, family B, member 1 Neighboring gene archain 1 Neighboring gene transmembrane protein 25 Neighboring gene tetratricopeptide repeat domain 36

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    cilium assembly IEA
    Inferred from Electronic Annotation
    more info
     
    cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    intraciliary transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    smoothened signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    smoothened signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cilium ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    intraciliary transport particle B IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    intraciliary transport particle B ISO
    Inferred from Sequence Orthology
    more info
     
    intraciliary transport particle B ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    motile cilium IEA
    Inferred from Electronic Annotation
    more info
     
    motile cilium ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    intraflagellar transport protein 46 homolog
    Names
    intraflagellar transport 46 homolog
    intraflagellar transport protein IFT46

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024760.1NP_001019931.1  intraflagellar transport protein 46 homolog

      See identical proteins and their annotated locations for NP_001019931.1

      Status: PROVISIONAL

      Source sequence(s)
      BC097954
      UniProtKB/Swiss-Prot
      Q6AXQ9
      Related
      ENSRNOP00000019011.5, ENSRNOT00000019011.5
      Conserved Domains (1) summary
      pfam12317
      Location:62264
      IFT46_B_C; Intraflagellar transport complex B protein 46 C terminal

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005107.4 Reference Rnor_6.0 Primary Assembly

      Range
      49075978..49097689
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006242930.3XP_006242992.1  intraflagellar transport protein 46 homolog isoform X2

      See identical proteins and their annotated locations for XP_006242992.1

      UniProtKB/Swiss-Prot
      Q6AXQ9
      Related
      ENSRNOP00000069445.1, ENSRNOT00000087922.1
      Conserved Domains (1) summary
      pfam12317
      Location:62264
      IFT46_B_C; Intraflagellar transport complex B protein 46 C terminal
    2. XM_017595553.1XP_017451042.1  intraflagellar transport protein 46 homolog isoform X1

    3. XM_006242931.3XP_006242993.1  intraflagellar transport protein 46 homolog isoform X2

      See identical proteins and their annotated locations for XP_006242993.1

      UniProtKB/Swiss-Prot
      Q6AXQ9
      Conserved Domains (1) summary
      pfam12317
      Location:62264
      IFT46_B_C; Intraflagellar transport complex B protein 46 C terminal

    Alternate Rn_Celera

    Genomic

    1. AC_000076.1 Alternate Rn_Celera

      Range
      44672352..44689060
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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