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    Syt16 synaptotagmin 16 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 299142, updated on 13-Aug-2019

    Summary

    Official Symbol
    Syt16provided by RGD
    Official Full Name
    synaptotagmin 16provided by RGD
    Primary source
    RGD:1564654
    See related
    Ensembl:ENSRNOG00000056012
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564654
    Expression
    Biased expression in Brain (RPKM 37.8), Adrenal (RPKM 5.4) and 5 other tissues See more
    Orthologs

    Genomic context

    See Syt16 in Genome Data Viewer
    Location:
    6q24
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (97076304..97199856)
    106 current Rn_Celera (GCF_000002265.2) 6 AC_000074.1 (91177534..91427252)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 6 NC_005105.3 (106340012..106466441) , (106536889..106630139)

    Chromosome 6 - NC_005105.4Genomic Context describing neighboring genes Neighboring gene hypoxia inducible factor 1 subunit alpha Neighboring gene transmembrane protein 183-like Neighboring gene small nuclear RNA activating complex, polypeptide 1 Neighboring gene uncharacterized LOC102550910 Neighboring gene uncharacterized LOC108351259 Neighboring gene uncharacterized LOC102551114

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from PubChem

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    NOT calcium-dependent phospholipid binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    phospholipid binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    protein heterodimerization activity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Process Evidence Code Pubs
    exocytosis IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    synaptotagmin 16; synaptotagmin-16
    Names
    synaptotagmin XVI

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005105.4 Reference Rnor_6.0 Primary Assembly

      Range
      97076304..97199856
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008764730.1XP_008762952.1  synaptotagmin-16 isoform X1

      See identical proteins and their annotated locations for XP_008762952.1

      UniProtKB/TrEMBL
      A0A0G2K644
      Conserved Domains (2) summary
      cd08389
      Location:349472
      C2A_Synaptotagmin-14_16; C2A domain first repeat present in Synaptotagmins 14 and 16
      cd08408
      Location:505642
      C2B_Synaptotagmin-14_16; C2 domain second repeat present in Synaptotagmins 14 and 16
    2. XM_017594463.1XP_017449952.1  synaptotagmin-16 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K644
      Conserved Domains (2) summary
      cd08389
      Location:349472
      C2A_Synaptotagmin-14_16; C2A domain first repeat present in Synaptotagmins 14 and 16
      cd08408
      Location:505642
      C2B_Synaptotagmin-14_16; C2 domain second repeat present in Synaptotagmins 14 and 16
    3. XM_234300.7XP_234300.4  synaptotagmin-16 isoform X1

      See identical proteins and their annotated locations for XP_234300.4

      UniProtKB/TrEMBL
      A0A0G2K644
      Related
      ENSRNOP00000073667.1, ENSRNOT00000088430.1
      Conserved Domains (2) summary
      cd08389
      Location:349472
      C2A_Synaptotagmin-14_16; C2A domain first repeat present in Synaptotagmins 14 and 16
      cd08408
      Location:505642
      C2B_Synaptotagmin-14_16; C2 domain second repeat present in Synaptotagmins 14 and 16

    Alternate Rn_Celera

    Genomic

    1. AC_000074.1 Alternate Rn_Celera

      Range
      91177534..91427252
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017603245.1XP_017458734.1  synaptotagmin-16 isoform X2

    2. XM_008776257.1XP_008774479.1  synaptotagmin-16 isoform X1

      See identical proteins and their annotated locations for XP_008774479.1

      UniProtKB/TrEMBL
      A0A0G2K644
      Conserved Domains (2) summary
      cd08389
      Location:349472
      C2A_Synaptotagmin-14_16; C2A domain first repeat present in Synaptotagmins 14 and 16
      cd08408
      Location:505642
      C2B_Synaptotagmin-14_16; C2 domain second repeat present in Synaptotagmins 14 and 16
    3. XM_008776258.2XP_008774480.1  synaptotagmin-16 isoform X1

      See identical proteins and their annotated locations for XP_008774480.1

      UniProtKB/TrEMBL
      A0A0G2K644
      Conserved Domains (2) summary
      cd08389
      Location:349472
      C2A_Synaptotagmin-14_16; C2A domain first repeat present in Synaptotagmins 14 and 16
      cd08408
      Location:505642
      C2B_Synaptotagmin-14_16; C2 domain second repeat present in Synaptotagmins 14 and 16
    4. XM_001077814.6XP_001077814.1  synaptotagmin-16 isoform X1

      See identical proteins and their annotated locations for XP_001077814.1

      UniProtKB/TrEMBL
      A0A0G2K644
      Conserved Domains (2) summary
      cd08389
      Location:349472
      C2A_Synaptotagmin-14_16; C2A domain first repeat present in Synaptotagmins 14 and 16
      cd08408
      Location:505642
      C2B_Synaptotagmin-14_16; C2 domain second repeat present in Synaptotagmins 14 and 16
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