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    Eif1ad eukaryotic translation initiation factor 1A domain containing [ Rattus norvegicus (Norway rat) ]

    Gene ID: 293673, updated on 2-Oct-2018

    Summary

    Official Symbol
    Eif1adprovided by RGD
    Official Full Name
    eukaryotic translation initiation factor 1A domain containingprovided by RGD
    Primary source
    RGD:1304686
    See related
    Ensembl:ENSRNOG00000020463
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1304686
    Expression
    Biased expression in Thymus (RPKM 118.5), Spleen (RPKM 97.4) and 9 other tissues See more
    Orthologs

    Genomic context

    See Eif1ad in Genome Data Viewer
    Location:
    1q43
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (220746387..220751687)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (227675718..227681018)

    Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene cystatin E/M Neighboring gene barrier to autointegration factor 1 Neighboring gene uncharacterized LOC103691278 Neighboring gene spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Homology

    Clone Names

    • MGC94083

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    translational initiation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    probable RNA-binding protein EIF1AD
    Names
    eukaryotic translation initiation factor 1A domain-containing protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008305.1NP_001008306.1  probable RNA-binding protein EIF1AD

      See identical proteins and their annotated locations for NP_001008306.1

      Status: PROVISIONAL

      Source sequence(s)
      BC085818
      UniProtKB/Swiss-Prot
      Q5RKI6
      Related
      ENSRNOP00000027752.3, ENSRNOT00000027753.5
      Conserved Domains (1) summary
      cd05792
      Location:25102
      S1_eIF1AD_like; S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found ...

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

      Range
      220746387..220751687
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000069.1 Alternate Rn_Celera

      Range
      200209677..200214977
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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