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    Ifitm5 interferon induced transmembrane protein 5 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 293617, updated on 13-Aug-2019

    Summary

    Official Symbol
    Ifitm5provided by RGD
    Official Full Name
    interferon induced transmembrane protein 5provided by RGD
    Primary source
    RGD:1307900
    See related
    Ensembl:ENSRNOG00000014923
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Thymus (RPKM 22.1), Spleen (RPKM 19.8) and 9 other tissues See more
    Orthologs

    Genomic context

    See Ifitm5 in Genome Data Viewer
    Location:
    1q41
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (213743331..213749879, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (220665679..220671039, complement)

    Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102555474 Neighboring gene protein-glucosylgalactosylhydroxylysine glucosidase Neighboring gene uncharacterized LOC108349669 Neighboring gene interferon induced transmembrane protein 2 Neighboring gene interferon induced transmembrane protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    bone mineralization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    bone mineralization ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    bone morphogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    bone morphogenesis ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    in utero embryonic development IEA
    Inferred from Electronic Annotation
    more info
     
    in utero embryonic development ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    integral component of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    interferon-induced transmembrane protein 5

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

      Range
      213743331..213749879 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002728832.4XP_002728878.1  interferon-induced transmembrane protein 5

      See identical proteins and their annotated locations for XP_002728878.1

      UniProtKB/TrEMBL
      G3V7W9
      Related
      ENSRNOP00000020023.4, ENSRNOT00000020023.6
      Conserved Domains (1) summary
      pfam04505
      Location:3194
      CD225; Interferon-induced transmembrane protein

    Alternate Rn_Celera

    Genomic

    1. AC_000069.1 Alternate Rn_Celera

      Range
      193678815..193685363 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002725746.4XP_002725792.1  interferon-induced transmembrane protein 5

      See identical proteins and their annotated locations for XP_002725792.1

      UniProtKB/TrEMBL
      G3V7W9
      Conserved Domains (1) summary
      pfam04505
      Location:3194
      CD225; Interferon-induced transmembrane protein
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