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    Cfdp1 craniofacial development protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 292027, updated on 21-Jul-2018

    Summary

    Official Symbol
    Cfdp1provided by RGD
    Official Full Name
    craniofacial development protein 1provided by RGD
    Primary source
    RGD:735080
    See related
    Ensembl:ENSRNOG00000019326
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    mouse homolog is involved in embryogenesis and craniofacial development [RGD, Feb 2006]
    Expression
    Biased expression in Brain (RPKM 209.3), Adrenal (RPKM 179.6) and 9 other tissues See more
    Orthologs

    Genomic context

    See Cfdp1 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (43989596..44078320, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 19 NC_005118.3 (54796566..54885236, complement)

    Chromosome 19 - NC_005118.4Genomic Context describing neighboring genes Neighboring gene BCAR1, Cas family scaffold protein Neighboring gene uncharacterized LOC103694331 Neighboring gene transmembrane protein 170A Neighboring gene carbohydrate sulfotransferase 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    cell adhesion IEA
    Inferred from Electronic Annotation
    more info
     
    cell adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of fibroblast apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of fibroblast apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of cell proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of cell shape ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    condensed chromosome kinetochore IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    craniofacial development protein 1
    Names
    bucentaur

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199378.3NP_955410.1  craniofacial development protein 1

      See identical proteins and their annotated locations for NP_955410.1

      Status: PROVISIONAL

      Source sequence(s)
      BC067246
      UniProtKB/Swiss-Prot
      Q75UQ2
      Related
      ENSRNOP00000026249.2, ENSRNOT00000026249.5
      Conserved Domains (1) summary
      pfam07572
      Location:218291
      BCNT; Bucentaur or craniofacial development

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005118.4 Reference Rnor_6.0 Primary Assembly

      Range
      43989596..44078320 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000087.1 Alternate Rn_Celera

      Range
      39095820..39183251 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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