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    Slc39a12 solute carrier family 39 member 12 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 291328, updated on 18-Apr-2019

    Summary

    Official Symbol
    Slc39a12provided by RGD
    Official Full Name
    solute carrier family 39 member 12provided by RGD
    Primary source
    RGD:1309305
    See related
    Ensembl:ENSRNOG00000025639
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Restricted expression toward (RPKM 14.9) See more
    Orthologs

    Genomic context

    See Slc39a12 in Genome Data Viewer
    Location:
    17q12.3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (81455731..81541742)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 17 NC_005116.3 (83202775..83288616)

    Chromosome 17 - NC_005116.4Genomic Context describing neighboring genes Neighboring gene transmembrane protein 236 Neighboring gene mannose receptor, C type 1 Neighboring gene microRNA 511 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene calcium voltage-gated channel auxiliary subunit beta 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    zinc ion transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    zinc ion transmembrane transporter activity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Process Evidence Code Pubs
    cellular zinc ion homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of microtubule polymerization IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of microtubule polymerization ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    regulation of neuron projection development IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of neuron projection development ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    signal transduction ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    zinc ion import across plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    zinc ion import across plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    integral component of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc transporter ZIP12
    Names
    solute carrier family 39 (zinc transporter), member 12

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106124.1NP_001099594.1  zinc transporter ZIP12

      See identical proteins and their annotated locations for NP_001099594.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473990
      Conserved Domains (1) summary
      pfam02535
      Location:235547
      Zip; ZIP Zinc transporter

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005116.4 Reference Rnor_6.0 Primary Assembly

      Range
      81455731..81541742
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006254285.3XP_006254347.1  zinc transporter ZIP12 isoform X1

      UniProtKB/TrEMBL
      D4A8R5
      Related
      ENSRNOP00000042204.5, ENSRNOT00000044313.5
      Conserved Domains (1) summary
      pfam02535
      Location:368680
      Zip; ZIP Zinc transporter
    2. XM_017600498.1XP_017455987.1  zinc transporter ZIP12 isoform X2

    3. XM_017600499.1XP_017455988.1  zinc transporter ZIP12 isoform X3

    4. XM_017600500.1XP_017455989.1  zinc transporter ZIP12 isoform X4

    Alternate Rn_Celera

    Genomic

    1. AC_000085.1 Alternate Rn_Celera

      Range
      76696501..76773017
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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