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    Zkscan4 zinc finger with KRAB and SCAN domains 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 291164, updated on 2-Oct-2018

    Summary

    Official Symbol
    Zkscan4provided by RGD
    Official Full Name
    zinc finger with KRAB and SCAN domains 4provided by RGD
    Primary source
    RGD:1309004
    See related
    Ensembl:ENSRNOG00000051823
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Zfp307; Znf307
    Expression
    Biased expression in Adrenal (RPKM 50.5), Brain (RPKM 43.2) and 9 other tissues See more
    Orthologs

    Genomic context

    See Zkscan4 in Genome Data Viewer
    Location:
    17p11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (45144000..45154973, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 17 NC_005116.3 (58313739..58324071)

    Chromosome 17 - NC_005116.4Genomic Context describing neighboring genes Neighboring gene olfactory receptor pseudogene 1659 Neighboring gene zinc finger with KRAB and SCAN domains 8 Neighboring gene NFKB activating protein-like Neighboring gene zinc finger and SCAN domain containing 26 Neighboring gene microRNA 1896

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    zinc finger protein with KRAB and SCAN domains 4; LOW QUALITY PROTEIN: zinc finger protein with KRAB and SCAN domains 4
    Names
    zinc finger protein 307

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005116.4 Reference Rnor_6.0 Primary Assembly

      Range
      45144000..45154973 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017600794.1XP_017456283.1  LOW QUALITY PROTEIN: zinc finger protein with KRAB and SCAN domains 4 isoform X1

      Related
      ENSRNOP00000073850.1, ENSRNOT00000084976.1

    Alternate Rn_Celera

    Genomic

    1. AC_000085.1 Alternate Rn_Celera

      Range
      53354175..53365001
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006222434.3XP_006222496.1  zinc finger protein with KRAB and SCAN domains 4 isoform X2

      Conserved Domains (5) summary
      COG5048
      Location:289453
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:293313
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:291313
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:47122
      SCAN; SCAN domain
      pfam13465
      Location:305330
      zf-H2C2_2; Zinc-finger double domain
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