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    Cts7 cathepsin 7 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 290970, updated on 21-Jul-2018

    Summary

    Official Symbol
    Cts7provided by RGD
    Official Full Name
    cathepsin 7provided by RGD
    Primary source
    RGD:1309226
    See related
    Ensembl:ENSRNOG00000033540
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus

    Genomic context

    See Cts7 in Genome Data Viewer
    Location:
    17p14
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (3280311..3285451)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 17 NC_005116.3 (5492909..5498049)

    Chromosome 17 - NC_005116.4Genomic Context describing neighboring genes Neighboring gene zinc finger protein 91-like Neighboring gene uncharacterized LOC108353116 Neighboring gene similar to cathepsin 1 precursor Neighboring gene cathepsin 8 Neighboring gene cathepsin 8-like 1

    Genomic regions, transcripts, and products

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    cysteine-type endopeptidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    cell division IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    proteolysis involved in cellular protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    trophoblast giant cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    endosome IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    lysosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106099.1NP_001099569.1  cathepsin 7 precursor

      See identical proteins and their annotated locations for NP_001099569.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474032
      UniProtKB/Swiss-Prot
      D3ZZ07
      Related
      ENSRNOP00000051349.2, ENSRNOT00000043686.2
      Conserved Domains (3) summary
      PTZ00203
      Location:3325
      PTZ00203; cathepsin L protease; Provisional
      smart00848
      Location:2987
      Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
      cd02248
      Location:113329
      Peptidase_C1A; Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, ...

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005116.4 Reference Rnor_6.0 Primary Assembly

      Range
      3280311..3285451
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000085.1 Alternate Rn_Celera

      Range
      3519200..3524340
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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