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    Cnih1 cornichon family AMPA receptor auxiliary protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289994, updated on 21-Jul-2018

    Summary

    Official Symbol
    Cnih1provided by RGD
    Official Full Name
    cornichon family AMPA receptor auxiliary protein 1provided by RGD
    Primary source
    RGD:1312030
    See related
    Ensembl:ENSRNOG00000009811
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Cnih
    Expression
    Biased expression in Adrenal (RPKM 227.9), Heart (RPKM 222.8) and 9 other tissues See more
    Orthologs

    Genomic context

    See Cnih1 in Genome Data Viewer
    Location:
    15p14
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (23568568..23580342, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 15 NC_005114.3 (27512055..27523919, complement)

    Chromosome 15 - NC_005114.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108352898 Neighboring gene cyclin-dependent kinase inhibitor 3 Neighboring gene glia maturation factor, beta Neighboring gene uncharacterized LOC108352899 Neighboring gene cell growth regulator with ring finger domain 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein cornichon homolog 1
    Names
    cornichon homolog
    protein cornichon homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106029.2NP_001099499.1  protein cornichon homolog 1

      See identical proteins and their annotated locations for NP_001099499.1

      Status: PROVISIONAL

      Source sequence(s)
      BC158747
      UniProtKB/TrEMBL
      B0BNA6
      Related
      ENSRNOP00000013331.3, ENSRNOT00000013331.6
      Conserved Domains (1) summary
      pfam03311
      Location:7135
      Cornichon; Cornichon protein

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005114.4 Reference Rnor_6.0 Primary Assembly

      Range
      23568568..23580342 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000083.1 Alternate Rn_Celera

      Range
      20436458..20448232 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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