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    Slamf9 SLAM family member 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289235, updated on 21-Jul-2018

    Summary

    Official Symbol
    Slamf9provided by RGD
    Official Full Name
    SLAM family member 9provided by RGD
    Primary source
    RGD:1305945
    See related
    Ensembl:ENSRNOG00000008045
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Spleen (RPKM 52.7), Thymus (RPKM 49.0) and 8 other tissues See more
    Orthologs

    Genomic context

    See Slamf9 in Genome Data Viewer
    Location:
    13q24
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (90836419..90856913, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 13 NC_005112.3 (95381996..95384776)

    Chromosome 13 - NC_005112.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102555223 Neighboring gene transgelin 2 Neighboring gene immunoglobulin superfamily, member 9 Neighboring gene uncharacterized LOC108352575 Neighboring gene uncharacterized LOC102555374

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105971.1NP_001099441.1  SLAM family member 9 precursor

      See identical proteins and their annotated locations for NP_001099441.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473985
      UniProtKB/TrEMBL
      D3ZLA6
      Related
      ENSRNOP00000010594.5, ENSRNOT00000010594.7
      Conserved Domains (3) summary
      cd05775
      Location:31128
      Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
      smart00410
      Location:25127
      IG_like; Immunoglobulin like
      pfam13927
      Location:133202
      Ig_3; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005112.4 Reference Rnor_6.0 Primary Assembly

      Range
      90836419..90856913 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017598714.1XP_017454203.1  SLAM family member 9 isoform X1

      UniProtKB/TrEMBL
      D3ZLA6
      Conserved Domains (3) summary
      cd05775
      Location:31128
      Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
      smart00410
      Location:25127
      IG_like; Immunoglobulin like
      pfam13927
      Location:133202
      Ig_3; Immunoglobulin domain

    Alternate Rn_Celera

    Genomic

    1. AC_000081.1 Alternate Rn_Celera

      Range
      84551584..84554364
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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