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    FDFT1 farnesyl-diphosphate farnesyltransferase 1 [ Bos taurus (cattle) ]

    Gene ID: 281767, updated on 27-Aug-2018

    Summary

    Official Symbol
    FDFT1provided by VGNC
    Official Full Name
    farnesyl-diphosphate farnesyltransferase 1provided by VGNC
    Primary source
    VGNC:VGNC:56966
    See related
    BGD:BT11645; Ensembl:ENSBTAG00000012432
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs

    Genomic context

    See FDFT1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 8 NC_037335.1 (7587994..7617580, complement)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 8 AC_000165.1 (7427460..7454019, complement)

    Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene defensin beta 136 Neighboring gene cathepsin B Neighboring gene nei like DNA glycosylase 2 Neighboring gene GATA binding protein 4

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Clone Names

    • MGC134482

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    ergosterol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    isoprenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    squalene synthase
    Names
    FPP:FPP farnesyltransferase
    SQS
    SS
    squalene synthetase
    NP_001013022.1
    XP_010805999.1
    XP_010806000.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013004.1NP_001013022.1  squalene synthase

      See identical proteins and their annotated locations for NP_001013022.1

      Status: PROVISIONAL

      Source sequence(s)
      BN000317
      UniProtKB/TrEMBL
      Q6IE76
      Related
      ENSBTAP00000016504.5, ENSBTAT00000016504.5
      Conserved Domains (1) summary
      cl00210
      Location:38370
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037335.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      7587994..7617580 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010807697.3XP_010805999.1  squalene synthase isoform X1

      Conserved Domains (1) summary
      cl00210
      Location:92424
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
    2. XM_010807698.2XP_010806000.1  squalene synthase isoform X2

      Conserved Domains (1) summary
      cl00210
      Location:18276
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
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