Format

Send to:

Choose Destination
    • Showing Current items.

    CLIC5 chloride intracellular channel 5 [ Bos taurus (cattle) ]

    Gene ID: 281696, updated on 27-Aug-2018

    Summary

    Gene symbol
    CLIC5
    Gene description
    chloride intracellular channel 5
    See related
    Ensembl:ENSBTAG00000010244
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs

    Genomic context

    See CLIC5 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 23 NC_037350.1 (19180486..19350762, complement)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 23 AC_000180.1 (19162785..19333272, complement)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene runt related transcription factor 2 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene uncharacterized LOC112443836 Neighboring gene U6 spliceosomal RNA Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 4 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    chloride channel activity TAS
    Traceable Author Statement
    more info
    PubMed 
    voltage-gated ion channel activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    chloride transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    chloride transport TAS
    Traceable Author Statement
    more info
    PubMed 
    regulation of ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    sensory perception of sound ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    chloride channel complex IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasmic vesicle TAS
    Traceable Author Statement
    more info
    PubMed 
    intracellular membrane-bounded organelle TAS
    Traceable Author Statement
    more info
    PubMed 
    microtubule organizing center IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane TAS
    Traceable Author Statement
    more info
    PubMed 

    General protein information

    Preferred Names
    chloride intracellular channel protein 5
    Names
    chloride channel protein p64
    chlorine channel protein p64

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_174276.3NP_776701.1  chloride intracellular channel protein 5

      See identical proteins and their annotated locations for NP_776701.1

      Status: PROVISIONAL

      Source sequence(s)
      L16547
      UniProtKB/Swiss-Prot
      P35526
      Related
      ENSBTAP00000013537.4, ENSBTAT00000013537.4
      Conserved Domains (3) summary
      TIGR00862
      Location:199435
      O-ClC; intracellular chloride channel protein
      cd10297
      Location:293434
      GST_C_CLIC5; C-terminal, alpha helical domain of Chloride Intracellular Channel 5
      cd03061
      Location:199286
      GST_N_CLIC; GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated ...

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      19180486..19350762 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005223375.4XP_005223432.1  chloride intracellular channel protein 5 isoform X1

      See identical proteins and their annotated locations for XP_005223432.1

      Conserved Domains (3) summary
      TIGR00862
      Location:14250
      O-ClC; intracellular chloride channel protein
      cd10297
      Location:108249
      GST_C_CLIC5; C-terminal, alpha helical domain of Chloride Intracellular Channel 5
      cd03061
      Location:11101
      GST_N_CLIC; GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated ...
    Support Center