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    Elmod3 ELMO/CED-12 domain containing 3 [ Mus musculus (house mouse) ]

    Gene ID: 232089, updated on 7-Jul-2018

    Summary

    Official Symbol
    Elmod3provided by MGI
    Official Full Name
    ELMO/CED-12 domain containing 3provided by MGI
    Primary source
    MGI:MGI:2445168
    See related
    Ensembl:ENSMUSG00000056698 Vega:OTTMUSG00000023557
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    RBM29; Rbed1; AI844780; C330008I15Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 13.1), kidney adult (RPKM 10.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Elmod3 in Genome Data Viewer
    Location:
    6; 6 C1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (72565922..72598413, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (72515921..72548336, complement)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene SH2 domain containing 6 Neighboring gene capping protein (actin filament), gelsolin-like Neighboring gene retinol saturase (all trans retinol 13,14 reductase) Neighboring gene trans-golgi network protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    • mRNA processing, organism-specific biosystem (from WikiPathways)
      mRNA processing, organism-specific biosystemAdapted from Reactome, see: [http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=REACT_1675.1 REACT 1675.1] This process describes the conversion of precursor messenger RNA into mature messenge...

    General gene information

    Markers

    Homology

    Clone Names

    • MGC27575

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    cellular_component ND
    No biological Data available
    more info
     
    cilium IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ELMO domain-containing protein 3
    Names
    RNA binding motif and ELMO domain 1
    RNA-binding motif and ELMO domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001253692.1NP_001240621.1  ELMO domain-containing protein 3

      See identical proteins and their annotated locations for NP_001240621.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon in the 5' UTR, compared to variant 1. Variants 1 and 2 enconde the same protein.
      Source sequence(s)
      AK084010, BE944793, BY074266
      Consensus CDS
      CCDS20243.1
      UniProtKB/Swiss-Prot
      Q91YP6
      Related
      ENSMUSP00000067768.1, OTTMUSP00000027719, ENSMUST00000070990.7, OTTMUST00000057462
      Conserved Domains (1) summary
      pfam04727
      Location:155308
      ELMO_CED12; ELMO/CED-12 family
    2. NM_001364553.1NP_001351482.1  ELMO domain-containing protein 3

      Status: VALIDATED

      Source sequence(s)
      AC125039, AK049155, AK084010, BE944793
      Conserved Domains (1) summary
      pfam04727
      Location:155308
      ELMO_CED12; ELMO/CED-12 family
    3. NM_001364554.1NP_001351483.1  ELMO domain-containing protein 3

      Status: VALIDATED

      Source sequence(s)
      AK049155, AK084010, BE944793, BU614609
      Conserved Domains (1) summary
      pfam04727
      Location:155308
      ELMO_CED12; ELMO/CED-12 family
    4. NM_144917.5NP_659166.1  ELMO domain-containing protein 3

      See identical proteins and their annotated locations for NP_659166.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK049155, AK084010, BE944793, BY074266
      Consensus CDS
      CCDS20243.1
      UniProtKB/Swiss-Prot
      Q91YP6
      Related
      ENSMUSP00000109703.1, OTTMUSP00000027718, ENSMUST00000114069.7, OTTMUST00000057460
      Conserved Domains (1) summary
      pfam04727
      Location:155308
      ELMO_CED12; ELMO/CED-12 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      72565922..72598413 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006505959.1XP_006506022.1  ELMO domain-containing protein 3 isoform X1

      UniProtKB/Swiss-Prot
      Q91YP6
      Conserved Domains (1) summary
      pfam04727
      Location:155308
      ELMO_CED12; ELMO/CED-12 family
    2. XM_011241299.1XP_011239601.1  ELMO domain-containing protein 3 isoform X1

      UniProtKB/Swiss-Prot
      Q91YP6
      Conserved Domains (1) summary
      pfam04727
      Location:155308
      ELMO_CED12; ELMO/CED-12 family
    3. XM_006505958.1XP_006506021.1  ELMO domain-containing protein 3 isoform X1

      See identical proteins and their annotated locations for XP_006506021.1

      UniProtKB/Swiss-Prot
      Q91YP6
      Conserved Domains (1) summary
      pfam04727
      Location:155308
      ELMO_CED12; ELMO/CED-12 family
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