Format

Send to:

Choose Destination
    • Showing Current items.

    Zbtb40 zinc finger and BTB domain containing 40 [ Mus musculus (house mouse) ]

    Gene ID: 230848, updated on 23-May-2018

    Summary

    Official Symbol
    Zbtb40provided by MGI
    Official Full Name
    zinc finger and BTB domain containing 40provided by MGI
    Primary source
    MGI:MGI:2682254
    See related
    Ensembl:ENSMUSG00000060862 Vega:OTTMUSG00000009824
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm571; BC059177; mKIAA0478; C230087D24
    Expression
    Ubiquitous expression in thymus adult (RPKM 3.9), ovary adult (RPKM 3.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Zbtb40 in Genome Data Viewer
    Location:
    4; 4 D3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (136979732..137049444, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (136535647..136604610, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene complement component 1, q subcomponent, alpha polypeptide Neighboring gene Eph receptor A8 Neighboring gene predicted gene, 31648 Neighboring gene predicted gene 13001

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • MGC62412

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    cellular response to DNA damage stimulus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cellular response to DNA damage stimulus ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    zinc finger and BTB domain-containing protein 40

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198248.1NP_937891.1  zinc finger and BTB domain-containing protein 40

      See identical proteins and their annotated locations for NP_937891.1

      Status: PROVISIONAL

      Source sequence(s)
      BC059177
      Consensus CDS
      CCDS18814.1
      UniProtKB/TrEMBL
      Q6PCS8
      Related
      ENSMUSP00000061899.7, OTTMUSP00000010384, ENSMUST00000049583.7, OTTMUST00000022755
      Conserved Domains (7) summary
      smart00225
      Location:25113
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8721078
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:856876
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:971989
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:9971019
      zf-C2H2; Zinc finger, C2H2 type
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:925950
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      136979732..137049444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006538763.3XP_006538826.1  zinc finger and BTB domain-containing protein 40 isoform X1

      Conserved Domains (7) summary
      smart00225
      Location:25113
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8721077
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:856876
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:970988
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:9961018
      zf-C2H2; Zinc finger, C2H2 type
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:925950
      zf-H2C2_2; Zinc-finger double domain
    2. XM_006538764.3XP_006538827.1  zinc finger and BTB domain-containing protein 40 isoform X2

      Conserved Domains (5) summary
      smart00225
      Location:25113
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:812895
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:827848
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:869893
      zf-H2C2_2; Zinc-finger double domain
    Support Center