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    Sprr1b small proline-rich protein 1B [ Mus musculus (house mouse) ]

    Gene ID: 20754, updated on 23-May-2018

    Summary

    Official Symbol
    Sprr1bprovided by MGI
    Official Full Name
    small proline-rich protein 1Bprovided by MGI
    Primary source
    MGI:MGI:106659
    See related
    Ensembl:ENSMUSG00000048455 Vega:OTTMUSG00000051839
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in stomach adult (RPKM 12.9), lung adult (RPKM 9.2) and 2 other tissues See more

    Genomic context

    See Sprr1b in Genome Data Viewer
    Location:
    3 F1; 3 40.14 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (92436809..92438817, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (92240731..92242701, complement)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene adhesion regulating molecule 1 pseudogene Neighboring gene small proline-rich protein 2K Neighboring gene small proline-rich protein 3 Neighboring gene small proline-rich protein 1A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    structural constituent of cytoskeleton TAS
    Traceable Author Statement
    more info
    PubMed 
    structural molecule activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    keratinization IEA
    Inferred from Electronic Annotation
    more info
     
    keratinocyte differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    peptide cross-linking IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of cell shape TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    cornified envelope IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cornified envelope TAS
    Traceable Author Statement
    more info
    PubMed 
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    cornifin-B
    Names
    SPR1 B
    SPR1B

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009265.3NP_033291.1  cornifin-B

      See identical proteins and their annotated locations for NP_033291.1

      Status: PROVISIONAL

      Source sequence(s)
      AK003398
      Consensus CDS
      CCDS17557.1
      UniProtKB/Swiss-Prot
      Q62267
      Related
      ENSMUSP00000058617.2, OTTMUSP00000069956, ENSMUST00000062160.3, OTTMUST00000130577
      Conserved Domains (1) summary
      pfam02389
      Location:17151
      Cornifin; Cornifin (SPRR) family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      92436809..92438817 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017319512.1XP_017175001.1  cornifin-B isoform X1

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