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    S100a11 S100 calcium binding protein A11 [ Mus musculus (house mouse) ]

    Gene ID: 20195, updated on 3-Oct-2018

    Summary

    Official Symbol
    S100a11provided by MGI
    Official Full Name
    S100 calcium binding protein A11provided by MGI
    Primary source
    MGI:MGI:1338798
    See related
    Ensembl:ENSMUSG00000027907 Vega:OTTMUSG00000022126
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    cal; EMAPI; Emap1; S100c; S100a14
    Expression
    Broad expression in bladder adult (RPKM 206.5), subcutaneous fat pad adult (RPKM 172.6) and 23 other tissues See more
    Orthologs

    Genomic context

    See S100a11 in Genome Data Viewer
    Location:
    3; 3 F2.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (93520496..93526288)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (93324418..93330210)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene trichohyalin Neighboring gene trichohyalin-like 1 Neighboring gene predicted gene, 29950 Neighboring gene S100 calcium binding protein A10 (calpactin)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Related articles in PubMed

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC107585

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    calcium-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of cell proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    NOT spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    collagen-containing extracellular matrix HDA PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein S100-A11
    Names
    EMAP
    S100 calcium binding protein A14
    calgizzarin
    calizzarin
    endothelial monocyte activating polypeptide 1
    endothelial monocyte-activating polypeptide
    protein S100-C

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_016740.3NP_058020.1  protein S100-A11

      See identical proteins and their annotated locations for NP_058020.1

      Status: VALIDATED

      Source sequence(s)
      AA207524, AK164352
      Consensus CDS
      CCDS38525.1
      UniProtKB/Swiss-Prot
      P50543
      Related
      ENSMUSP00000029515.4, OTTMUSP00000024913, ENSMUST00000029515.4, OTTMUST00000052513
      Conserved Domains (2) summary
      cd05023
      Location:290
      S-100A11; S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 ...
      pfam13499
      Location:1579
      EF-hand_7; EF-hand domain pair

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      93520496..93526288
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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