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    Rps16 ribosomal protein S16 [ Mus musculus (house mouse) ]

    Gene ID: 20055, updated on 9-Sep-2018

    Summary

    Official Symbol
    Rps16provided by MGI
    Official Full Name
    ribosomal protein S16provided by MGI
    Primary source
    MGI:MGI:98118
    See related
    Ensembl:ENSMUSG00000037563 Vega:OTTMUSG00000022980
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA420385; AI317031
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 646.0), liver E14 (RPKM 606.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rps16 in Genome Data Viewer
    Location:
    7; 7 A3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (28350689..28352698)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (29135708..29137717)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene translocase of inner mitochondrial membrane 50 Neighboring gene suppressor of Ty 5 Neighboring gene snoRNA AF357399 Neighboring gene pleckstrin homology domain containing, family G (with RhoGef domain) member 2 Neighboring gene nuclear encoded tRNA isoleucine 16 (anticodon TAT)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    cellular response to leukemia inhibitory factor IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    rRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    ribosomal small subunit biogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013647.2NP_038675.2  40S ribosomal protein S16

      See identical proteins and their annotated locations for NP_038675.2

      Status: VALIDATED

      Source sequence(s)
      AV496563, BC090618
      Consensus CDS
      CCDS39858.1
      UniProtKB/Swiss-Prot
      P14131
      UniProtKB/TrEMBL
      A4FUS1, Q5CZY9
      Related
      ENSMUSP00000103940.1, OTTMUSP00000026473, ENSMUST00000082134.5, OTTMUST00000055308
      Conserved Domains (1) summary
      PLN00210
      Location:6146
      PLN00210; 40S ribosomal protein S16; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      28350689..28352698
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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