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    cdd-2 Cytidine deaminase [ Caenorhabditis elegans ]

    Gene ID: 186044, updated on 5-Aug-2018

    Summary

    Gene symbol
    cdd-2
    Gene description
    Cytidine deaminase
    Primary source
    WormBase:WBGene00000392
    Locus tag
    CELE_F49E8.4
    Gene type
    protein coding
    RNA name
    Cytidine deaminase
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

    Genomic context

    See cdd-2 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    3
    Sequence:
    Chromosome: IV; NC_003282.8 (7547252..7547893, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene hypothetical protein Neighboring gene Puromycin-sensitive aminopeptidase Neighboring gene Oocyte Excluded Factor Neighboring gene Protein dif-1

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    RNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    cytidine deaminase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytidine deaminase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytidine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
     
    deoxycytidine deaminase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    zinc ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    RNA modification IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytidine deamination IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytidine deamination IEA
    Inferred from Electronic Annotation
    more info
     
    deoxycytidine catabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    embryo development ending in birth or egg hatching IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    uridine biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    Cytidine deaminase
    NP_501221.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      7547252..7547893 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_068820.3NP_501221.1  Cytidine deaminase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501221.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20628
      Conserved Domains (2) summary
      COG0295
      Location:9139
      Cdd; Cytidine deaminase [Nucleotide transport and metabolism]
      cl00269
      Location:14139
      cytidine_deaminase-like; Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members ...
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