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    rps-3 40S ribosomal protein S3 [ Caenorhabditis elegans ]

    Gene ID: 175879, updated on 2-Oct-2018

    Summary

    Gene symbol
    rps-3
    Gene description
    40S ribosomal protein S3
    Primary source
    WormBase:WBGene00004472
    Locus tag
    CELE_C23G10.3
    Gene type
    protein coding
    RNA name
    40S ribosomal protein S3
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

    Genomic context

    See rps-3 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    5
    Sequence:
    Chromosome: III; NC_003281.10 (6206825..6207930)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene 26S proteasome non-ATPase regulatory subunit 1 Neighboring gene hypothetical protein Neighboring gene RutC family protein C23G10.2 Neighboring gene Putative serine/threonine-protein phosphatase C23G10.1;Serine/threonine-protein phosphatase

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    DNA-(apurinic or apyrimidinic site) endonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    damaged DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    oxidized purine DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    oxidized purine nucleobase lesion DNA N-glycosylase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    NOT oxidized purine nucleobase lesion DNA N-glycosylase activity IKR
    Inferred from Key Residues
    more info
    PubMed 
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    DNA repair IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of DNA repair IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of apoptotic signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    40S ribosomal protein S3
    NP_498349.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      6206825..6207930
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065948.4NP_498349.1  40S ribosomal protein S3 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498349.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P48152
      Conserved Domains (3) summary
      cd02413
      Location:1797
      40S_S3_KH; K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH ...
      PTZ00084
      Location:5218
      PTZ00084; 40S ribosomal protein S3; Provisional
      pfam00189
      Location:107188
      Ribosomal_S3_C; Ribosomal protein S3, C-terminal domain
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